Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000288-TA|BGIBMGA000288-PA|IPR002816|TraB determinant
(339 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7549| Best HMM Match : TraB (HMM E-Value=6.79994e-41) 191 8e-49
SB_37663| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.19
SB_42483| Best HMM Match : ADK_lid (HMM E-Value=1.5e-21) 33 0.44
SB_36009| Best HMM Match : Collagen (HMM E-Value=0) 32 0.58
SB_29302| Best HMM Match : LRR_1 (HMM E-Value=1.1e-11) 31 1.3
SB_33494| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.8
SB_6477| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.8
SB_57095| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_50954| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_13913| Best HMM Match : WH2 (HMM E-Value=8.8e-05) 30 2.3
SB_8599| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_56223| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23) 29 4.1
SB_54430| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_15356| Best HMM Match : Vitellogenin_N (HMM E-Value=5.9e-07) 29 5.4
SB_32229| Best HMM Match : 7tm_1 (HMM E-Value=0) 29 7.2
SB_54674| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.2
SB_50178| Best HMM Match : F5_F8_type_C (HMM E-Value=0.6) 29 7.2
SB_22519| Best HMM Match : Pterin_4a (HMM E-Value=0.86) 29 7.2
SB_15509| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.2
SB_32293| Best HMM Match : BRCA2 (HMM E-Value=0) 28 9.5
SB_42927| Best HMM Match : Spore_permease (HMM E-Value=1.1) 28 9.5
SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41) 28 9.5
>SB_7549| Best HMM Match : TraB (HMM E-Value=6.79994e-41)
Length = 478
Score = 191 bits (465), Expect = 8e-49
Identities = 95/183 (51%), Positives = 127/183 (69%), Gaps = 1/183 (0%)
Query: 119 DGGKVIQEVKPHIVTVELCVQRTNILLLDEEVILREAKNINIKKIRATMAQNGVFNGLMY 178
D K IQ V+P V VELC R +IL DEE +LREAKNI+++K++ + Q+GV G+M
Sbjct: 175 DVAKTIQAVQPDRVLVELCKSRIDILKYDEEFLLREAKNIDMQKLKLAIKQSGVVGGIMQ 234
Query: 179 ILLLNMSAHITRELGMAPGGEFRRAMAEAKKIPNCVVQLGDRAIDVTLHRAIASLSWGQT 238
+LLL+MSAHIT++LGMAPGGEFR A EA+K+ C V LGDR I VTL RA+A+L+ Q
Sbjct: 235 VLLLSMSAHITQQLGMAPGGEFRAAYREARKL-GCQVHLGDRPIQVTLSRAMAALTVWQK 293
Query: 239 IRFIWHLLTSNQTISLEEVEKCKQKKXXXXXXXXXXXXFPALKQVFVVERDMFLCHSLQV 298
++ WHLLT+ + IS E+VE+CKQK FP L +VFV ERD +L SL++
Sbjct: 294 VKLAWHLLTTKEPISPEDVERCKQKDLLAEMLAEMTGDFPLLYKVFVTERDQYLARSLRL 353
Query: 299 AAL 301
+A+
Sbjct: 354 SAV 356
>SB_37663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1735
Score = 33.9 bits (74), Expect = 0.19
Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 6/115 (5%)
Query: 14 KPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGGGDASIKINENMPGENSGKPKFVTS 73
K +DNS+ F + K ++ E F+ + G +S + +N+ + K T
Sbjct: 1055 KGKDNSEATNFVQKDVTNKDNVETEKTTFLTGNENGPQSSGRSGRAFKEKNNKEVKATTV 1114
Query: 74 TPDEKKESPSENQ------IADSNPECDMEGVPELPLDEGLPSTVTVLDAPDGGK 122
E+K+ PS +N E V E+ +E + T L D GK
Sbjct: 1115 EQQEEKKLPSRGSGRGKATRGKNNEATTAENVEEMTKEEPVEEGTTSLTEDDTGK 1169
>SB_42483| Best HMM Match : ADK_lid (HMM E-Value=1.5e-21)
Length = 110
Score = 32.7 bits (71), Expect = 0.44
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Query: 5 DRLLQNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGGGDASIKINENMPGEN 64
DR+ Q H + F PPK K DIT E + + G + N N P +
Sbjct: 10 DRIKQRWVHAVSGRVYNLEFNPPKVEGKDDITGEPLTQREDDKQGAYTTTTNNNNTPKKK 69
Query: 65 SGKPKFVTSTPDEKKESPS-ENQIADSNPE 93
+P+ TS E+P N + D+ E
Sbjct: 70 GRRPRISTSCVCNPLETPQFINSLEDALDE 99
>SB_36009| Best HMM Match : Collagen (HMM E-Value=0)
Length = 687
Score = 32.3 bits (70), Expect = 0.58
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 7/46 (15%)
Query: 73 STPDEK----KESPSENQIADSNPECDMEGVPELPLDEGLPSTVTV 114
++PD K ++ P+EN ADS PEC + VP P D+G P+ + V
Sbjct: 544 ASPDNKDLVERKDPTEN--ADS-PECQEQPVPPDPADQGEPTEIPV 586
>SB_29302| Best HMM Match : LRR_1 (HMM E-Value=1.1e-11)
Length = 606
Score = 31.1 bits (67), Expect = 1.3
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 28 KPSVKRDITNECQLFIKA--EDGGGDASIKINENMPGENSGKPKFVTSTPDEKKESPSEN 85
KP+ + D + + A E+ G D S + PG +S KP+ P + +SP+EN
Sbjct: 529 KPNPEEDWPEDMAAYEDAMREESGNDDSSPVT-TQPGLSSEKPEASEPEPAPEPKSPAEN 587
Query: 86 QIADSNPECDMEGVPELP 103
A ++ +P P
Sbjct: 588 STASNDTSTTAIPLPPPP 605
>SB_33494| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1097
Score = 30.7 bits (66), Expect = 1.8
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 55 KINENMPGENSGKPKFVTSTPDEKKESPSENQIADSNPECDMEGV 99
K NE+M +N G P V+ + ES +N I+D+ + + +GV
Sbjct: 988 KSNESMVSDNDGAPSKVSDSGVGGMESEEDNWISDAEDDNNEDGV 1032
>SB_6477| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 354
Score = 30.7 bits (66), Expect = 1.8
Identities = 19/93 (20%), Positives = 38/93 (40%)
Query: 58 ENMPGENSGKPKFVTSTPDEKKESPSENQIADSNPECDMEGVPELPLDEGLPSTVTVLDA 117
E +P E PK +P + + SP E ++ E ME P + G+ T +
Sbjct: 249 EGLPKEIEVSPKVTKVSPKQIETSPKEAEVLSKENEISMEETEVSPEETGVSQTKNGISQ 308
Query: 118 PDGGKVIQEVKPHIVTVELCVQRTNILLLDEEV 150
+ +E+ +E+ + LL++ ++
Sbjct: 309 IEAEVQEKEIYFPSKAIEILAKEVEPLLVEVQL 341
>SB_57095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 123
Score = 30.3 bits (65), Expect = 2.3
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 34 DITNECQLFIKAEDGGGDASIKINENMPGENSGKPKFVTSTPDEKKESPSE 84
D++N+ L + E+ D ++N PGEN +P+ T +E++E +E
Sbjct: 64 DLSNDAYLDPRQEEEEEDP--EVNGGEPGENEAEPEGETEEAEEREEESTE 112
>SB_50954| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 768
Score = 30.3 bits (65), Expect = 2.3
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 59 NMPGENSGKPKFVTS--TPDEKKESPSENQIADSNPECDMEGVPELPLDEGLPSTVTVLD 116
+ PG + K V S +P+++ E P++ AD++ D+ E G+ T+
Sbjct: 10 SQPGAKNSKVSPVNSPDSPNQQTEEPTDKHGADASVAVDLGTQDEGAGPSGVQGDDTIRP 69
Query: 117 APDGGK 122
A DGGK
Sbjct: 70 ALDGGK 75
>SB_13913| Best HMM Match : WH2 (HMM E-Value=8.8e-05)
Length = 493
Score = 30.3 bits (65), Expect = 2.3
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 58 ENMPGENSGKPKFVTSTPDEKKESPSENQIADSNPECDMEGVPELPLDEGLPSTV 112
E +P E PK + K E P E I+ + E + ELP +E P V
Sbjct: 203 EELP-EEEATPKTPEEVEENKIEEPEEEAISKTPEEVTENKIKELPEEEATPKEV 256
>SB_8599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 30.3 bits (65), Expect = 2.3
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 7 LLQNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGGGDASIKINENMPGENSG 66
+ +DE KP +N D + + + + + +AED S + E+ P E++
Sbjct: 246 ITSDDEEKPSENHDEKVHIQENETENNE---KISVIDEAEDKKESDSTRDRESPPREDAK 302
Query: 67 KPKFVTSTPDEKKESPS 83
+P +TS D ++ S
Sbjct: 303 RPNIITSLVDTTNQTHS 319
>SB_56223| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1719
Score = 29.5 bits (63), Expect = 4.1
Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 9/124 (7%)
Query: 5 DRLLQNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGGGDASIKINENMPGEN 64
+R +Q + + RD I PP P + + +K++ G S K NE G
Sbjct: 992 ERDIQEIQRQKRDPGPAI--PPPNPDANPEDATGNDMNLKSDAGSVLESSKANEEGIGTR 1049
Query: 65 SGKPKFVTSTPDEKKESPSENQIADSNPECDMEGVPELPLDEGLP----STVTVLDAPDG 120
S VT+ EK +S + + DSN D + + + LP +++ + D P
Sbjct: 1050 SPTVVGVTNV-TEKTDSKARS--VDSNQSIDKQSTKDSNVSRLLPLHTEASLGMEDMPKR 1106
Query: 121 GKVI 124
G +I
Sbjct: 1107 GDLI 1110
>SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1601
Score = 29.5 bits (63), Expect = 4.1
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 63 ENSGKPKFVTSTPDEKKESPSENQIADSNPEC-DMEGVPELPLDEGLPSTVTVLDAPDGG 121
E SGK + K S S+ + A + + D PE+ L G+ S +T + DGG
Sbjct: 722 EESGKQESQQVKDKGKANSDSKTESAPKDDKNKDNSNRPEITLI-GVGSPITETENKDGG 780
Query: 122 KVIQEVKPHIV 132
K + +P +V
Sbjct: 781 KTVANSEPSVV 791
>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
Length = 2123
Score = 29.5 bits (63), Expect = 4.1
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 28 KPSVKRDITNECQLFIKAEDGGGDASIKINENMPGENSGKPKFVTSTPDEKKESPSENQI 87
KPS K+ I +E Q ++ D S K N + +SG + ++ P + K+ PS+ +I
Sbjct: 233 KPS-KQAIQSEEQAMKQSRKETNDTSKK-NASNSVLSSGNSELIS--PSDMKKQPSKPEI 288
Query: 88 ADSNPECDMEGVPELPLDEGLPS 110
DS M G + G PS
Sbjct: 289 DDSKANGHMSGDSQSSSTSGKPS 311
>SB_54430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 401
Score = 29.1 bits (62), Expect = 5.4
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 48 GGGDASIKINENMPGENSGKPKFVTSTPDEKKESPSENQIADSNPE 93
GGG+ ++I E + + GK K+ + ++ SEN + N E
Sbjct: 309 GGGEKQVEIEEEIQRNDGGKVKWTEQMSKDLIDTSSENPSCNRNGE 354
>SB_15356| Best HMM Match : Vitellogenin_N (HMM E-Value=5.9e-07)
Length = 514
Score = 29.1 bits (62), Expect = 5.4
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
Query: 31 VKRDITNECQLFIKAEDGGGDASIKINENMPGENSGKPKFVTSTPD--EKKESPSENQIA 88
VK D++ C + E + M +G PK +T T D E E P++ +
Sbjct: 111 VKTDVSGTCAQDYRVETSAEPFHQYLANRM---ETGIPKTITKTNDYSECSERPAQTRNY 167
Query: 89 DSNPECDMEGVPELPLDEGLPSTVTVLDA 117
+C E +P+ + + S LDA
Sbjct: 168 LETEDCSPERGSRIPMSKTITSCQVYLDA 196
>SB_32229| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 389
Score = 28.7 bits (61), Expect = 7.2
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 230 IASLSWGQTIRFIWHLLTSNQTISLEEVEKC 260
I + WG I F LL + TIS+EE E C
Sbjct: 149 ICIVLWGVAIAFTLPLLIAKTTISIEENEYC 179
>SB_54674| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1149
Score = 28.7 bits (61), Expect = 7.2
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 14 KPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGGGDASIKINE---NMPGENSGKPKF 70
K R+ S G A +P+VKR T ++ + GG S+++ + + P S P
Sbjct: 327 KRREPSGGKT-AKVEPAVKRRETKNKD--VQRKGGGDRRSVELWQPSLSSPPSWSPTPSM 383
Query: 71 VTSTPDEKKESPSENQIADSNPE 93
S EK++S S + ADS+P+
Sbjct: 384 RKSKKKEKRQSSSRPKDADSSPQ 406
>SB_50178| Best HMM Match : F5_F8_type_C (HMM E-Value=0.6)
Length = 497
Score = 28.7 bits (61), Expect = 7.2
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 56 INENMPGENSGKPKFVTSTPDEKKESPSENQIADSNPE--CDMEGVPELPLDE 106
I + P + PD++ +P E DS PE D + PE P DE
Sbjct: 337 IRQQQPDDGQETEDSTPEEPDDEDSTPEEPDDEDSTPEEPDDEDSTPEDPDDE 389
>SB_22519| Best HMM Match : Pterin_4a (HMM E-Value=0.86)
Length = 1578
Score = 28.7 bits (61), Expect = 7.2
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 199 EFRRAMAEAKKIPNCVVQLGDRAIDVTLHRAIASLSWGQTIRFIWHLLTSNQTISLEEVE 258
E+R A+A K PN +GD I + + IA + + +L ++NQ +L +E
Sbjct: 968 EYRAAIAADKADPNWYPGIGDSPITQEIRQQIAQANNAANVIAKNYLTSNNQAAALRAME 1027
Query: 259 K 259
+
Sbjct: 1028 E 1028
>SB_15509| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 308
Score = 28.7 bits (61), Expect = 7.2
Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 3/99 (3%)
Query: 15 PRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGGGDASIKINENMPGENSGKPKFVTST 74
PR NS + + P S + D + + E G D S ++E G S P + +
Sbjct: 127 PRTNSKDSLISGPGTSNESDTRDSATDDVTLEVGVDDGSY-VDEK--GALSDSPWIESES 183
Query: 75 PDEKKESPSENQIADSNPECDMEGVPELPLDEGLPSTVT 113
D+ +PS +DS D P +D S+V+
Sbjct: 184 DDDDAHTPSGLLNSDSEAMIDTSATPSGAIDISQQSSVS 222
>SB_32293| Best HMM Match : BRCA2 (HMM E-Value=0)
Length = 1649
Score = 28.3 bits (60), Expect = 9.5
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 60 MPGENSGKPK-FVTSTPDEKKESPSENQIADS---NPECDMEGVPELPLDE 106
+PGE++GKP+ V P + E A+S P DM+ + + P+DE
Sbjct: 663 LPGESTGKPQASVLPRPADNWEQEEGTLGAESYANEPLFDMDALSQFPVDE 713
>SB_42927| Best HMM Match : Spore_permease (HMM E-Value=1.1)
Length = 670
Score = 28.3 bits (60), Expect = 9.5
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 87 IADSNPECDMEGVPELPLDEGLPSTVTVLDAPDGGKVIQEV 127
+ADS+ C ++G + P E + + ++DA D K ++ +
Sbjct: 423 VADSSGSCRVDGWAKRPGKENITLVIIIMDADDYSKPLESL 463
>SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41)
Length = 1682
Score = 28.3 bits (60), Expect = 9.5
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 77 EKKESPSENQIADSNPECDMEGVPELPLDEGLPSTVTVLDAPDGGKVIQEVKPHIVTVEL 136
EKK+S + ++ADS+ D +G+P+ + P GK+++ +++ +
Sbjct: 15 EKKKSKKKKKVADSDVSMDEDGLPKRVTCTACGRHIN----PSHGKILRHPTLNVLVCKK 70
Query: 137 CVQRTN 142
C Q N
Sbjct: 71 CNQYYN 76
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.135 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,861,874
Number of Sequences: 59808
Number of extensions: 438293
Number of successful extensions: 1108
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1082
Number of HSP's gapped (non-prelim): 37
length of query: 339
length of database: 16,821,457
effective HSP length: 83
effective length of query: 256
effective length of database: 11,857,393
effective search space: 3035492608
effective search space used: 3035492608
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)
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