GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000288-TA|BGIBMGA000288-PA|IPR002816|TraB determinant
         (339 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    29   0.037
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    29   0.037
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    24   1.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   7.4  

>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 29.5 bits (63), Expect = 0.037
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 34  DITNECQLFIKAEDGGGDASIKINENMPGENSGKPKFVTSTPDE---KKESPSENQIADS 90
           DI +EC+ F+  +  GG      NEN+   +S +P +    P        S  E  +AD 
Sbjct: 39  DIADECERFLAPKGFGGVQISPPNENLVVTSSNRPWWERYQPVSYILNTRSGDEAALADM 98

Query: 91  NPECDMEGV 99
              C+  GV
Sbjct: 99  ISRCNAVGV 107


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 29.5 bits (63), Expect = 0.037
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 34  DITNECQLFIKAEDGGGDASIKINENMPGENSGKPKFVTSTPDE---KKESPSENQIADS 90
           DI +EC+ F+  +  GG      NEN+   +S +P +    P        S  E  +AD 
Sbjct: 40  DIADECERFLAPKGFGGVQISPPNENLVVTSSNRPWWERYQPVSYILNTRSGDEAALADM 99

Query: 91  NPECDMEGV 99
              C+  GV
Sbjct: 100 ISRCNAVGV 108


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 68  PKFVTSTPDEKKESPSENQIADSNPECDMEGVPELPLD 105
           P+     P   +  P E +++DS+ + D+ G P  PLD
Sbjct: 30  PETALEAPKSPENHP-ETELSDSDCDLDVTGTPP-PLD 65


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 4/34 (11%)

Query: 73  STPDEKKESPSENQIADSNPECDMEGVPELPLDE 106
           STPD++++SP+    +D   E D E V +  +DE
Sbjct: 843 STPDKREKSPT----SDKAQEADGEVVVKKEVDE 872


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 97   EGVPELPLDEGLPSTVT 113
            EGVPE P D+   +T+T
Sbjct: 1097 EGVPEQPPDKATCTTLT 1113


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.135    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,722
Number of Sequences: 317
Number of extensions: 3130
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 5
length of query: 339
length of database: 114,650
effective HSP length: 57
effective length of query: 282
effective length of database: 96,581
effective search space: 27235842
effective search space used: 27235842
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)