Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000288-TA|BGIBMGA000288-PA|IPR002816|TraB determinant
(339 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak... 30 0.54
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 29 1.3
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 28 1.7
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 27 3.8
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 27 5.1
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 27 5.1
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 27 5.1
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po... 27 5.1
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 26 6.7
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 26 8.8
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual 26 8.8
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz... 26 8.8
>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 708
Score = 29.9 bits (64), Expect = 0.54
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 137 CVQRTNILLLDEEVILR--EAKNINIKKIRATMAQNGVFNGLMYILLLNMSAHI 188
C R N++ L E+ + EA+ +++K + ++ NG F+ +Y + LN HI
Sbjct: 443 CRFRRNLINLLPEITVAHFEAEALDLKFVAKSLPSNGPFSSFIYHVKLNAIEHI 496
>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 394
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 46 EDGGGDASIKINENMPGENSGKPKFVTSTPDEKKESPSENQIAD 89
E+ D+ ++++E+ ++ P STP + +P+E+QI D
Sbjct: 243 EEDEEDSDVELSESSLSDDEDSPLRCPSTPVQTAAAPNESQIPD 286
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 28.3 bits (60), Expect = 1.7
Identities = 21/86 (24%), Positives = 36/86 (41%)
Query: 9 QNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGGGDASIKINENMPGENSGKP 68
Q ++ KP NS + +P+ + + C L + D ++ E+ S P
Sbjct: 162 QPEDTKPNTNSPPVYHTVLRPTPETLWQDLCLLSESFANSLSDEAVLTLESNILLASEAP 221
Query: 69 KFVTSTPDEKKESPSENQIADSNPEC 94
F+T + + NQ+ADS P C
Sbjct: 222 LFLTPAKSKAEMIQFMNQLADSAPPC 247
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 32 KRDITNECQLFIKAEDGGGDASIKINENMPGENSGKPKFVTSTPDEKKESPS 83
K + T + +L + + A+ + N EN KP F P + +E+PS
Sbjct: 485 KTEATTDKKLNVPKFEFKPTATADVQTNRLKENEPKPTFFAQLPSKTQETPS 536
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 26.6 bits (56), Expect = 5.1
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 45 AEDGGGDASIKI-NENMPGENSGKPKFVTSTPDEKKESPSENQIADSNPECDMEG 98
AE+G + K N +MP NS K T + PS N S+P + G
Sbjct: 391 AENGSTNLPQKTSNSDMPTANSMPVKLENGTDYSTSQEPSSNANNQSSPTSSING 445
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 26.6 bits (56), Expect = 5.1
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 70 FVTSTPDEKKESPS---ENQIADSNPE 93
F T+TPD K ESPS N D +PE
Sbjct: 86 FCTTTPDPKTESPSFVKYNAHCDDHPE 112
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 26.6 bits (56), Expect = 5.1
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 43 IKAEDGGGDASIKINENMPGE---NSGKPKFVTSTP 75
IK E G+ +I E++P E NS PKFVT P
Sbjct: 506 IKLEMSNGELNIVDMESVPTEAADNSDFPKFVTEQP 541
>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 26.6 bits (56), Expect = 5.1
Identities = 25/124 (20%), Positives = 56/124 (45%), Gaps = 5/124 (4%)
Query: 38 ECQLFIKAEDGGGDASIKINENMPGE-NSGKPKFVTSTPDEKKESPSEN-QIADSNPECD 95
+ +L ++ I +N + G+ G+ F+ + ++ + N A+++
Sbjct: 35 DIELTMRTTKKSSKKGIPLNLMVVGDVGLGRTAFINTLCEKPLIRHNNNFDPAEASSVSP 94
Query: 96 MEGVP---ELPLDEGLPSTVTVLDAPDGGKVIQEVKPHIVTVELCVQRTNILLLDEEVIL 152
+E VP ++ L++G +TVLD P G+ I + ++ + + +L +E I
Sbjct: 95 VEIVPYQTDIILEDGTKINLTVLDTPHFGEAIDNENNFDIILQYIESQYDNVLEEESRIK 154
Query: 153 REAK 156
R A+
Sbjct: 155 RNAR 158
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 26.2 bits (55), Expect = 6.7
Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 8/104 (7%)
Query: 28 KPSVKRDITNECQLFIK--AEDGGGDASIKINENMPGENSGKPKFVTSTPDEKKESPSEN 85
+PS K+D+ E +E+ G+ S + + P F + +E+ E
Sbjct: 44 EPSFKKDVDEEIPSLTAELSEEEEGEYSSESGRSTP--ELSPDDFEDADDEEEFEEIDAG 101
Query: 86 QIADSNPECDMEGVPELPLDEGLPSTVTVLDAPDGGKVIQEVKP 129
+DS+ E G+ E P DE L + DG K+ + P
Sbjct: 102 YSSDSSTEDVAPGLYESPYDENLYINYDI----DGKKITRPATP 141
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.8 bits (54), Expect = 8.8
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 1 MDAADRLLQNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGG 49
M A R ++ +PRD ++ + KPS+ D + +LF +A G
Sbjct: 411 MGAEKRAKLAEKDRPRDVAERVALGLSKPSMSSDTMIDSRLFNQASGLG 459
>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
Length = 629
Score = 25.8 bits (54), Expect = 8.8
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 27 PKPSVKRDITNECQLFIKAEDGGGDASI---KINENMPGENSGKPKFVTSTPDEKKESPS 83
PKP V E I DG S+ K + GEN+ + T +E E PS
Sbjct: 410 PKPPVMGTWAKEPNHLIGIIDGKHSHSLHHDKFDACTKGENTANNGYGPQTLNETSEEPS 469
Query: 84 ENQIADSN 91
+ I D++
Sbjct: 470 LDDILDTS 477
>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 504
Score = 25.8 bits (54), Expect = 8.8
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 30 SVKRDITNECQLFIKAEDGGGDASIKINENMPG 62
SV RD+ +L K + GGD I++ N PG
Sbjct: 30 SVNRDVAAYTELAAKNVNAGGDEEIRV-ANYPG 61
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.135 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,457,930
Number of Sequences: 5004
Number of extensions: 59482
Number of successful extensions: 166
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 160
Number of HSP's gapped (non-prelim): 13
length of query: 339
length of database: 2,362,478
effective HSP length: 73
effective length of query: 266
effective length of database: 1,997,186
effective search space: 531251476
effective search space used: 531251476
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 54 (25.8 bits)
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