Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000288-TA|BGIBMGA000288-PA|IPR002816|TraB determinant
(339 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0367 - 24444268-24444393,24444524-24444635,24444721-244448... 37 0.020
03_05_1094 - 30348366-30348467,30348571-30348753,30348833-303489... 33 0.33
02_04_0281 + 21563588-21563696,21565053-21565708,21565793-215658... 33 0.33
06_03_0606 - 22689935-22689998,22690716-22691159,22691669-226920... 32 0.76
04_03_0846 - 20249085-20249192,20249418-20249501,20249687-202498... 32 0.76
08_02_1466 + 27322340-27322610,27322907-27322995,27323276-273233... 31 1.3
01_01_0975 - 7686297-7686458,7687117-7687245,7687754-7687831,768... 31 1.3
11_01_0639 - 5128139-5128159,5128237-5128329,5128431-5128491,512... 30 3.1
02_04_0144 - 20177136-20177231,20177525-20178010,20178103-20178162 30 3.1
12_01_0773 - 7039294-7039422,7039440-7039479,7039557-7039649,703... 29 4.1
10_02_0126 - 5543658-5543670,5543748-5543840,5544344-5544529,554... 29 5.4
05_05_0390 - 24593985-24595205,24595790-24595867,24596234-24596980 29 5.4
12_02_0719 + 22500217-22500395,22500506-22500551,22500671-225007... 29 7.1
05_04_0380 + 20792090-20792662 29 7.1
11_06_0638 - 25719109-25719334,25719485-25719510,25719974-257200... 28 9.4
06_03_1085 + 27491735-27492754,27492854-27492978,27493088-274932... 28 9.4
04_04_0752 - 27791126-27791167,27791792-27791863,27792771-277928... 28 9.4
>05_05_0367 -
24444268-24444393,24444524-24444635,24444721-24444821,
24445727-24445831,24445929-24446015,24446630-24446689,
24446834-24446881,24447571-24447816
Length = 294
Score = 37.1 bits (82), Expect = 0.020
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 9/102 (8%)
Query: 123 VIQEVKPHIVTVELCVQRTNILLLDEEVILREAKNINIKKIRATMAQNGVFNGLMYILLL 182
VI +KP V +ELC R IL + + I++ K + + F G++Y L
Sbjct: 91 VIDYLKPQAVFLELCASRVAILTPQNLQVPTMNEMIDMWKKK----KMNTF-GILYSWFL 145
Query: 183 NMSAHITRELGMAPGGEFRRAMAEAKKIPNCVVQLGDRAIDV 224
A + +L + PG EFR A EA V+ LGDR + +
Sbjct: 146 ---AKVASQLDVLPGAEFRVAFEEAMSYGGKVI-LGDRPVQL 183
>03_05_1094 -
30348366-30348467,30348571-30348753,30348833-30348934,
30349617-30349967,30350049-30350276,30350353-30350509,
30351189-30351370,30351443-30351866,30351949-30352892,
30353509-30353773,30354558-30355120
Length = 1166
Score = 33.1 bits (72), Expect = 0.33
Identities = 23/90 (25%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 172 VFNGLMYILLLNMSAHITRELG-MAPGGEFRRAMAEAKKIPNCVVQLGD-RAIDVTLHRA 229
V NG+ Y++ + ++ E+G + E + + K +PNC+ +LG + + VT ++
Sbjct: 174 VHNGVFYVIEQRYAMYLPPEIGSLRKLQELDLSFNKLKNLPNCITELGALKFLKVTNNKL 233
Query: 230 IASLSWGQTIRFIWHL-LTSNQTISLEEVE 258
+ S ++R + L L++N+ SL V+
Sbjct: 234 VDLPSGISSLRCLESLDLSNNRLTSLGSVK 263
>02_04_0281 +
21563588-21563696,21565053-21565708,21565793-21565879,
21566487-21567461,21567640-21567786
Length = 657
Score = 33.1 bits (72), Expect = 0.33
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 5/115 (4%)
Query: 47 DGGGDASIKINENMPGENSGKPKFVTSTPDEKKESPSENQIADSNPECDMEGVPELPLDE 106
D G + + ++ N G +S P + D K S S ++ A S+ E G E P ++
Sbjct: 521 DRGDEFRVFLSNNTEGSSSSAP---ADSDDGYKRSQSGSEEASSSSETTEPGDEEHPAED 577
Query: 107 GLPSTVTVLDAPDGGKVIQEVKPHIVTVELCVQRTNILLLDEEVILREAKNINIK 161
LP+ G + ++V+P + R N L E+ +L N NIK
Sbjct: 578 SLPADFVAFMISLGWEKDKKVEPLGLEEIAVTVRANEEL--EQKLLSMEDNANIK 630
>06_03_0606 - 22689935-22689998,22690716-22691159,22691669-22692057,
22692130-22692223,22692507-22692599,22692705-22692913,
22692999-22693833,22693948-22694038,22698069-22698892,
22699384-22700489,22701353-22701415
Length = 1403
Score = 31.9 bits (69), Expect = 0.76
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 26 PPKPSVKRDITNECQLFIKAEDG-GGDASIKINENMPGENSGKPKFVTSTPDEKKESPSE 84
PP P R T + I+ +G GG +S +I + G GK S D+ ++ E
Sbjct: 1136 PPLPLSARPSTARHSIRIEEREGVGGSSSSRIKQ---GRRKGKAPAPPSDDDDDEDEEDE 1192
Query: 85 NQIADSNPECDMEGV 99
+ +A E DM +
Sbjct: 1193 DYVAPDAEEIDMSHI 1207
>04_03_0846 -
20249085-20249192,20249418-20249501,20249687-20249803,
20249899-20249979,20250563-20250622,20250762-20250804,
20250899-20250997,20251260-20251531,20251765-20251886,
20252376-20252517
Length = 375
Score = 31.9 bits (69), Expect = 0.76
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 72 TSTPD-EKKESPSENQIADSNPECDMEGVPELPLDEGLPSTVTVLDAPDGGKVIQEVKPH 130
++ PD E +E P E+QI D N E E+P V D + +VIQ+++ +
Sbjct: 73 SAEPDVETQEQPEESQIPDDNKVKPFEEEEEIPAVAEASIKVVAEDKLESSEVIQDIEEN 132
Query: 131 I 131
+
Sbjct: 133 V 133
>08_02_1466 +
27322340-27322610,27322907-27322995,27323276-27323368,
27323515-27323613,27323763-27324017
Length = 268
Score = 31.1 bits (67), Expect = 1.3
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Query: 219 DRAIDVTLHRAIASLSWGQTIRFIWHL---LTSNQTISLEEVEKCKQKKXXXXXXXXXXX 275
+R L RA SLSW + + + L +TS S +E K
Sbjct: 114 NRPFGEELERAWKSLSWDEKTKLVVSLFRGITSTTDTSQDE----KAAGSPYELYEKLSI 169
Query: 276 XFPALKQVFVVERDMFLCHSLQ 297
+P+L Q + ERDMFL SL+
Sbjct: 170 SYPSLLQPLIHERDMFLAWSLK 191
>01_01_0975 -
7686297-7686458,7687117-7687245,7687754-7687831,
7688011-7688469,7690648-7690788,7691771-7692421
Length = 539
Score = 31.1 bits (67), Expect = 1.3
Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 4/106 (3%)
Query: 14 KPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGGGDASIKINENMPGENSGKPKFVTS 73
K +D+ + P + K +E + ED A+ + + G + KP +S
Sbjct: 143 KKKDDEERSSSLPEEKDAKNGGGDEVLSAVTTEDSSAGAAKSCSPSAEGHSKRKPSSSSS 202
Query: 74 TPDEKKESPSENQI-ADSNPECD---MEGVPELPLDEGLPSTVTVL 115
+ K S + ++ D PE ++ V +L +D+ +PS + L
Sbjct: 203 SAAAGKNSHGKRKVKVDWTPELHRRFVQAVEQLGIDKAVPSRILEL 248
>11_01_0639 -
5128139-5128159,5128237-5128329,5128431-5128491,
5128579-5128689,5128770-5129021,5129105-5129440,
5129486-5131140,5131316-5131555
Length = 922
Score = 29.9 bits (64), Expect = 3.1
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 62 GENSGKPKFVTSTPDEKKESPSENQIADS--NPECDMEG-VPELPLDEGLPSTVTVLDAP 118
G ++G+ + K P + ++ D +PE D E VPE+P + LP T + P
Sbjct: 504 GTDAGEKPVLPKPGLGKPPRPPKRKVTDKADDPEMDKENPVPEVPPEIALPETAKEIAPP 563
Query: 119 DGGKVIQ 125
+ IQ
Sbjct: 564 ETAMEIQ 570
>02_04_0144 - 20177136-20177231,20177525-20178010,20178103-20178162
Length = 213
Score = 29.9 bits (64), Expect = 3.1
Identities = 15/54 (27%), Positives = 22/54 (40%)
Query: 74 TPDEKKESPSENQIADSNPECDMEGVPELPLDEGLPSTVTVLDAPDGGKVIQEV 127
+PD +P S + P +P+ G+ T T+L P G QEV
Sbjct: 131 SPDASASAPDSAAPGQSGGTAFIRSSPAVPVPRGVTDTATILPMPTPGDKHQEV 184
>12_01_0773 -
7039294-7039422,7039440-7039479,7039557-7039649,
7039900-7040010,7040091-7040342,7040407-7040903,
7040923-7041777,7041883-7042143,7042183-7042551,
7042637-7042876
Length = 948
Score = 29.5 bits (63), Expect = 4.1
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 62 GENSGKPKFVTSTPDEKKESPSENQIADS--NPECDMEG-VPELPLDEGLPSTVTVLDAP 118
G N+G+ + K P + ++ D +PE D + VPE+P + LP T + P
Sbjct: 486 GTNAGEKPVLPKPGLGKPPRPPKRKVTDKADDPELDKKNPVPEVPPEIALPETAKEIALP 545
Query: 119 DGGKVIQEVKPHIVTVELCV 138
+ E+ P +E+ V
Sbjct: 546 E---TAMEIAPPETVMEIQV 562
>10_02_0126 -
5543658-5543670,5543748-5543840,5544344-5544529,
5544613-5545310,5545323-5546237,5546842-5547081
Length = 714
Score = 29.1 bits (62), Expect = 5.4
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 49 GGDASIKINENMPGENSGKPKFVTSTPDEKKESPSENQIADSNPECDM-EGVPELPLDEG 107
G DA+ K+ PG GKP E+ E EN + D PE + + E+P+ E
Sbjct: 361 GTDATQKLVVPKPG--LGKPPRPPKMKAEEPEMQKENPVPDVPPEIVVPKAAMEIPVPE- 417
Query: 108 LPSTVTVLD 116
+P +TV +
Sbjct: 418 VPMEITVAE 426
>05_05_0390 - 24593985-24595205,24595790-24595867,24596234-24596980
Length = 681
Score = 29.1 bits (62), Expect = 5.4
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 31 VKRDITNECQLFIKAE-DGGGDASIKINENMPGENSGKPKFVTSTPDEKKESPSENQIAD 89
V D+ N +K E +GGGD K +E + + +S+ DE+++ ++ +
Sbjct: 140 VDADMNNVSLALVKEEAEGGGDREDKSDEEESESSKEESSEASSSSDEEEDKRESSEASS 199
Query: 90 SNPE 93
S+ E
Sbjct: 200 SSDE 203
>12_02_0719 +
22500217-22500395,22500506-22500551,22500671-22500745,
22500846-22500932,22501077-22501148,22501267-22501338,
22501448-22501519,22501644-22502510
Length = 489
Score = 28.7 bits (61), Expect = 7.1
Identities = 32/121 (26%), Positives = 44/121 (36%), Gaps = 7/121 (5%)
Query: 48 GGGDAS--IKINENMPGENSGKPKFVTSTPDEKKESPSENQIADSNPECDMEGVPELPLD 105
G DA I +NEN ENS + F S+PD E N D D P
Sbjct: 190 GKNDAENEIIVNENEGEENSAENTFSLSSPDITLEEHDNNNCVDQ----DTASTETTPTT 245
Query: 106 EGLPSTVTVLDAPDGGKVIQEVKPHIVTVELCVQRTNILLLDEEVILREAKNINIKKIRA 165
E + V + + EVKP T + +T + L +E A+ +K
Sbjct: 246 EKVMHQEQVSEQVKMAET-AEVKPAEETETTPMVQTEVKLEEETETTPVAETTEVKPAEE 304
Query: 166 T 166
T
Sbjct: 305 T 305
>05_04_0380 + 20792090-20792662
Length = 190
Score = 28.7 bits (61), Expect = 7.1
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 48 GGGDASI-KINENMPGENSGKPKFVTSTPDEKKESPSENQIADSNPECDMEGVPELPLDE 106
G GD +I++NM G++ + E++E + Q+A+S E E + E DE
Sbjct: 104 GKGDGYYWRIHDNMDGDSDDDGDNPAAAAAEEEERDKKEQLAESADEKKKEQLAE-AADE 162
Query: 107 GLPSTVTVL-DAPDGGKVIQEVK 128
+ T T GG++++ K
Sbjct: 163 KVSVTATATPKKKKGGRIMKACK 185
>11_06_0638 -
25719109-25719334,25719485-25719510,25719974-25720058,
25720189-25720320,25720615-25720673,25720742-25721048,
25721572-25721653,25721730-25721863,25721948-25722041,
25722112-25722235,25722497-25722556
Length = 442
Score = 28.3 bits (60), Expect = 9.4
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 58 ENMPGENSGKPKFVTST-PDEKKESPSENQIADSNPECDMEGVPELP 103
E PG+NS + K VT T P+ ++ + +IAD P E + + P
Sbjct: 318 EFSPGQNSKRHKKVTETSPNGEENQLQQPKIADQQPSGHEEQMDQQP 364
>06_03_1085 +
27491735-27492754,27492854-27492978,27493088-27493232,
27493328-27493591
Length = 517
Score = 28.3 bits (60), Expect = 9.4
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 58 ENMPGENSGKPKFVTSTPDEKKESPSENQIAD-SNPECDMEGVPELPLDEGLPSTVTVL 115
E GE +PK + EK+E P+E + A + + + GVP LP +G +T VL
Sbjct: 128 EEEQGEEEEEPKKEEADEGEKEEKPAEEEAAAVVDKDIALWGVPLLP-SKGDDATDVVL 185
>04_04_0752 -
27791126-27791167,27791792-27791863,27792771-27792855,
27792971-27793236,27794117-27794301,27794925-27795018,
27795193-27795284,27795401-27795539,27796101-27796385
Length = 419
Score = 28.3 bits (60), Expect = 9.4
Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 26 PPKPSVKRDITNECQLFIKAED--GGGDASIKINENMPGENSGKPKFVTSTPDEKKESPS 83
PP K+ N+ +F K GGG K +PG G+ F+ D +
Sbjct: 27 PPADGTKKKKNNKKSMFKKTSKAGGGGAGRSKHPLRVPGMRPGERCFICKAADHVAKVCP 86
Query: 84 ENQIADSNPEC 94
E + + N C
Sbjct: 87 EKSLWEKNKIC 97
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.135 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,898,281
Number of Sequences: 37544
Number of extensions: 412835
Number of successful extensions: 1021
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1015
Number of HSP's gapped (non-prelim): 20
length of query: 339
length of database: 14,793,348
effective HSP length: 82
effective length of query: 257
effective length of database: 11,714,740
effective search space: 3010688180
effective search space used: 3010688180
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)
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