Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000288-TA|BGIBMGA000288-PA|IPR002816|TraB determinant
(339 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ529300-1|ABF71986.1| 376|Homo sapiens TTG2 protein. 175 2e-43
BC093029-1|AAH93029.1| 292|Homo sapiens TRABD protein protein. 175 2e-43
BC012445-1|AAH12445.1| 330|Homo sapiens TRABD protein protein. 175 2e-43
AL449244-1|CAC15001.1| 376|Homo sapiens hypothetical protein pr... 175 2e-43
AL022328-7|CAB63044.1| 304|Homo sapiens protein ( Human DNA seq... 175 2e-43
AL022328-5|CAI42754.1| 376|Homo sapiens protein ( Human DNA seq... 175 2e-43
AL022328-6|CAB63043.1| 309|Homo sapiens protein ( Human DNA seq... 173 7e-43
AK024447-1|BAB15737.1| 145|Homo sapiens FLJ00037 protein protein. 37 0.12
U47742-1|AAC50662.1| 2004|Homo sapiens monocytic leukaemia zinc ... 31 4.4
AY861435-1|AAX56125.1| 1065|Homo sapiens protocadherin 11X isofo... 31 4.4
AY861434-1|AAX56124.1| 1329|Homo sapiens protocadherin 11X isofo... 31 4.4
AY861433-1|AAX56123.1| 1310|Homo sapiens protocadherin 11X isofo... 31 4.4
AY861432-1|AAX56122.1| 1339|Homo sapiens protocadherin 11X isofo... 31 4.4
AL133321-2|CAI41436.1| 1337|Homo sapiens protocadherin 11 X-link... 31 4.4
AL133321-1|CAI41435.1| 1347|Homo sapiens protocadherin 11 X-link... 31 4.4
AL133274-3|CAI41629.1| 1310|Homo sapiens protocadherin 11 X-link... 31 4.4
AL133274-2|CAI41631.1| 1337|Homo sapiens protocadherin 11 X-link... 31 4.4
AL133274-1|CAI41630.1| 1347|Homo sapiens protocadherin 11 X-link... 31 4.4
AL121869-5|CAI41414.1| 1337|Homo sapiens protocadherin 11 X-link... 31 4.4
AL121869-4|CAI41413.1| 1347|Homo sapiens protocadherin 11 X-link... 31 4.4
AL121869-3|CAI41412.1| 1310|Homo sapiens protocadherin 11 X-link... 31 4.4
AJ564963-1|CAD92434.1| 787|Homo sapiens protocadherin protein. 31 4.4
AJ564962-1|CAD92433.1| 762|Homo sapiens protocadherin protein. 31 4.4
AJ564961-1|CAD92432.1| 841|Homo sapiens protocadherin protein. 31 4.4
AJ564960-1|CAD92431.1| 831|Homo sapiens protocadherin protein. 31 4.4
AJ564936-1|CAD92415.1| 787|Homo sapiens protocadherin protein. 31 4.4
AJ564935-1|CAD92414.1| 762|Homo sapiens protocadherin protein. 31 4.4
AJ564934-1|CAD92413.1| 841|Homo sapiens protocadherin protein. 31 4.4
AJ564933-1|CAD92412.1| 831|Homo sapiens protocadherin protein. 31 4.4
AJ276804-1|CAC13123.1| 1025|Homo sapiens protocadherin protein. 31 4.4
AJ276803-1|CAC13122.1| 1037|Homo sapiens protocadherin protein. 31 4.4
AF332219-1|AAK13471.1| 1337|Homo sapiens protocadherin 11 protein. 31 4.4
AF332218-1|AAK13470.1| 1347|Homo sapiens protocadherin 11 protein. 31 4.4
AF332217-1|AAK13469.1| 1340|Homo sapiens protocadherin 11 protein. 31 4.4
AF332216-1|AAK13468.1| 1048|Homo sapiens protocadherin 11 protein. 31 4.4
AF277053-1|AAL55729.1| 1037|Homo sapiens protocadherin-PC protein. 31 4.4
AF217288-1|AAK82656.1| 1310|Homo sapiens protocadherin-S protein. 31 4.4
AF206516-1|AAK82655.1| 1347|Homo sapiens protocadherin-S protein. 31 4.4
AB026187-1|BAA90765.1| 1021|Homo sapiens protocadherin-Xa protein. 31 4.4
AB020626-1|BAA74842.1| 989|Homo sapiens KIAA0819 protein protein. 31 4.4
BC006562-1|AAH06562.2| 377|Homo sapiens MICAL3 protein protein. 31 7.7
>DQ529300-1|ABF71986.1| 376|Homo sapiens TTG2 protein.
Length = 376
Score = 175 bits (426), Expect = 2e-43
Identities = 85/179 (47%), Positives = 118/179 (65%)
Query: 122 KVIQEVKPHIVTVELCVQRTNILLLDEEVILREAKNINIKKIRATMAQNGVFNGLMYILL 181
K I+EV+P +V VELC R ++L +DE +LREA+ ++++K++ + QNG+ +GLM +LL
Sbjct: 93 KTIREVQPDVVVVELCQYRVSMLKMDESTLLREAQELSLEKLQQAVRQNGLMSGLMQMLL 152
Query: 182 LNMSAHITRELGMAPGGEFRRAMAEAKKIPNCVVQLGDRAIDVTLHRAIASLSWGQTIRF 241
L +SAHIT +LGMAPGGEFR A EA K+P C LGDR I VT RAIA+LS+ Q +R
Sbjct: 153 LKVSAHITEQLGMAPGGEFREAFKEASKVPFCKFHLGDRPIPVTFKRAIAALSFWQKVRL 212
Query: 242 IWHLLTSNQTISLEEVEKCKQKKXXXXXXXXXXXXFPALKQVFVVERDMFLCHSLQVAA 300
W L + IS ++VE+CKQK FP L + V ERD++L + L+ AA
Sbjct: 213 AWGLCFLSDPISKDDVERCKQKDLLEQMMAEMIGEFPDLHRTIVSERDVYLTYMLRQAA 271
>BC093029-1|AAH93029.1| 292|Homo sapiens TRABD protein protein.
Length = 292
Score = 175 bits (426), Expect = 2e-43
Identities = 85/179 (47%), Positives = 118/179 (65%)
Query: 122 KVIQEVKPHIVTVELCVQRTNILLLDEEVILREAKNINIKKIRATMAQNGVFNGLMYILL 181
K I+EV+P +V VELC R ++L +DE +LREA+ ++++K++ + QNG+ +GLM +LL
Sbjct: 93 KTIREVQPDVVVVELCQYRVSMLKMDESTLLREAQELSLEKLQQAVRQNGLMSGLMQMLL 152
Query: 182 LNMSAHITRELGMAPGGEFRRAMAEAKKIPNCVVQLGDRAIDVTLHRAIASLSWGQTIRF 241
L +SAHIT +LGMAPGGEFR A EA K+P C LGDR I VT RAIA+LS+ Q +R
Sbjct: 153 LKVSAHITEQLGMAPGGEFREAFKEASKVPFCKFHLGDRPIPVTFKRAIAALSFWQKVRL 212
Query: 242 IWHLLTSNQTISLEEVEKCKQKKXXXXXXXXXXXXFPALKQVFVVERDMFLCHSLQVAA 300
W L + IS ++VE+CKQK FP L + V ERD++L + L+ AA
Sbjct: 213 AWGLCFLSDPISKDDVERCKQKDLLEQMMAEMIGEFPDLHRTIVSERDVYLTYMLRQAA 271
>BC012445-1|AAH12445.1| 330|Homo sapiens TRABD protein protein.
Length = 330
Score = 175 bits (426), Expect = 2e-43
Identities = 85/179 (47%), Positives = 118/179 (65%)
Query: 122 KVIQEVKPHIVTVELCVQRTNILLLDEEVILREAKNINIKKIRATMAQNGVFNGLMYILL 181
K I+EV+P +V VELC R ++L +DE +LREA+ ++++K++ + QNG+ +GLM +LL
Sbjct: 47 KTIREVQPDVVVVELCQYRVSMLKMDESTLLREAQELSLEKLQQAVRQNGLMSGLMQMLL 106
Query: 182 LNMSAHITRELGMAPGGEFRRAMAEAKKIPNCVVQLGDRAIDVTLHRAIASLSWGQTIRF 241
L +SAHIT +LGMAPGGEFR A EA K+P C LGDR I VT RAIA+LS+ Q +R
Sbjct: 107 LKVSAHITEQLGMAPGGEFREAFKEASKVPFCKFHLGDRPIPVTFKRAIAALSFWQKVRL 166
Query: 242 IWHLLTSNQTISLEEVEKCKQKKXXXXXXXXXXXXFPALKQVFVVERDMFLCHSLQVAA 300
W L + IS ++VE+CKQK FP L + V ERD++L + L+ AA
Sbjct: 167 AWGLCFLSDPISKDDVERCKQKDLLEQMMAEMIGEFPDLHRTIVSERDVYLTYMLRQAA 225
>AL449244-1|CAC15001.1| 376|Homo sapiens hypothetical protein
protein.
Length = 376
Score = 175 bits (426), Expect = 2e-43
Identities = 85/179 (47%), Positives = 118/179 (65%)
Query: 122 KVIQEVKPHIVTVELCVQRTNILLLDEEVILREAKNINIKKIRATMAQNGVFNGLMYILL 181
K I+EV+P +V VELC R ++L +DE +LREA+ ++++K++ + QNG+ +GLM +LL
Sbjct: 93 KTIREVQPDVVVVELCQYRVSMLKMDESTLLREAQELSLEKLQQAVRQNGLMSGLMQMLL 152
Query: 182 LNMSAHITRELGMAPGGEFRRAMAEAKKIPNCVVQLGDRAIDVTLHRAIASLSWGQTIRF 241
L +SAHIT +LGMAPGGEFR A EA K+P C LGDR I VT RAIA+LS+ Q +R
Sbjct: 153 LKVSAHITEQLGMAPGGEFREAFKEASKVPFCKFHLGDRPIPVTFKRAIAALSFWQKVRL 212
Query: 242 IWHLLTSNQTISLEEVEKCKQKKXXXXXXXXXXXXFPALKQVFVVERDMFLCHSLQVAA 300
W L + IS ++VE+CKQK FP L + V ERD++L + L+ AA
Sbjct: 213 AWGLCFLSDPISKDDVERCKQKDLLEQMMAEMIGEFPDLHRTIVSERDVYLTYMLRQAA 271
>AL022328-7|CAB63044.1| 304|Homo sapiens protein ( Human DNA
sequence from clone RP3-402G11 on chromosome
22q13.31-13.33. ).
Length = 304
Score = 175 bits (426), Expect = 2e-43
Identities = 85/179 (47%), Positives = 118/179 (65%)
Query: 122 KVIQEVKPHIVTVELCVQRTNILLLDEEVILREAKNINIKKIRATMAQNGVFNGLMYILL 181
K I+EV+P +V VELC R ++L +DE +LREA+ ++++K++ + QNG+ +GLM +LL
Sbjct: 21 KTIREVQPDVVVVELCQYRVSMLKMDESTLLREAQELSLEKLQQAVRQNGLMSGLMQMLL 80
Query: 182 LNMSAHITRELGMAPGGEFRRAMAEAKKIPNCVVQLGDRAIDVTLHRAIASLSWGQTIRF 241
L +SAHIT +LGMAPGGEFR A EA K+P C LGDR I VT RAIA+LS+ Q +R
Sbjct: 81 LKVSAHITEQLGMAPGGEFREAFKEASKVPFCKFHLGDRPIPVTFKRAIAALSFWQKVRL 140
Query: 242 IWHLLTSNQTISLEEVEKCKQKKXXXXXXXXXXXXFPALKQVFVVERDMFLCHSLQVAA 300
W L + IS ++VE+CKQK FP L + V ERD++L + L+ AA
Sbjct: 141 AWGLCFLSDPISKDDVERCKQKDLLEQMMAEMIGEFPDLHRTIVSERDVYLTYMLRQAA 199
>AL022328-5|CAI42754.1| 376|Homo sapiens protein ( Human DNA
sequence from clone RP3-402G11 on chromosome
22q13.31-13.33. ).
Length = 376
Score = 175 bits (426), Expect = 2e-43
Identities = 85/179 (47%), Positives = 118/179 (65%)
Query: 122 KVIQEVKPHIVTVELCVQRTNILLLDEEVILREAKNINIKKIRATMAQNGVFNGLMYILL 181
K I+EV+P +V VELC R ++L +DE +LREA+ ++++K++ + QNG+ +GLM +LL
Sbjct: 93 KTIREVQPDVVVVELCQYRVSMLKMDESTLLREAQELSLEKLQQAVRQNGLMSGLMQMLL 152
Query: 182 LNMSAHITRELGMAPGGEFRRAMAEAKKIPNCVVQLGDRAIDVTLHRAIASLSWGQTIRF 241
L +SAHIT +LGMAPGGEFR A EA K+P C LGDR I VT RAIA+LS+ Q +R
Sbjct: 153 LKVSAHITEQLGMAPGGEFREAFKEASKVPFCKFHLGDRPIPVTFKRAIAALSFWQKVRL 212
Query: 242 IWHLLTSNQTISLEEVEKCKQKKXXXXXXXXXXXXFPALKQVFVVERDMFLCHSLQVAA 300
W L + IS ++VE+CKQK FP L + V ERD++L + L+ AA
Sbjct: 213 AWGLCFLSDPISKDDVERCKQKDLLEQMMAEMIGEFPDLHRTIVSERDVYLTYMLRQAA 271
>AL022328-6|CAB63043.1| 309|Homo sapiens protein ( Human DNA
sequence from clone RP3-402G11 on chromosome
22q13.31-13.33. ).
Length = 309
Score = 173 bits (421), Expect = 7e-43
Identities = 84/177 (47%), Positives = 117/177 (66%)
Query: 124 IQEVKPHIVTVELCVQRTNILLLDEEVILREAKNINIKKIRATMAQNGVFNGLMYILLLN 183
I+EV+P +V VELC R ++L +DE +LREA+ ++++K++ + QNG+ +GLM +LLL
Sbjct: 28 IREVQPDVVVVELCQYRVSMLKMDESTLLREAQELSLEKLQQAVRQNGLMSGLMQMLLLK 87
Query: 184 MSAHITRELGMAPGGEFRRAMAEAKKIPNCVVQLGDRAIDVTLHRAIASLSWGQTIRFIW 243
+SAHIT +LGMAPGGEFR A EA K+P C LGDR I VT RAIA+LS+ Q +R W
Sbjct: 88 VSAHITEQLGMAPGGEFREAFKEASKVPFCKFHLGDRPIPVTFKRAIAALSFWQKVRLAW 147
Query: 244 HLLTSNQTISLEEVEKCKQKKXXXXXXXXXXXXFPALKQVFVVERDMFLCHSLQVAA 300
L + IS ++VE+CKQK FP L + V ERD++L + L+ AA
Sbjct: 148 GLCFLSDPISKDDVERCKQKDLLEQMMAEMIGEFPDLHRTIVSERDVYLTYMLRQAA 204
>AK024447-1|BAB15737.1| 145|Homo sapiens FLJ00037 protein protein.
Length = 145
Score = 36.7 bits (81), Expect = 0.12
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 253 SLEEVEKCKQKKXXXXXXXXXXXXFPALKQVFVVERDMFLCHSLQVAA 300
S ++VE+CKQK FP L + V ERD++L + L+ AA
Sbjct: 77 SKDDVERCKQKDLLEQMMAEMIGEFPDLHRTIVSERDVYLTYMLRQAA 124
>U47742-1|AAC50662.1| 2004|Homo sapiens monocytic leukaemia zinc
finger protein protein.
Length = 2004
Score = 31.5 bits (68), Expect = 4.4
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 2 DAADRLLQNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGGGDASIKINENMP 61
DAA QND+H D DG + + K ++ T E +K E G ++ + N
Sbjct: 1303 DAAAETAQNDDHDADDEDDGHLESTKKKELEEQPTRE---DVKEEPGVQESFLDANMQKS 1359
Query: 62 GENSGKPKFVTSTPDEKKESPSEN 85
E K K T D ++E PS +
Sbjct: 1360 REKI-KDKEETEL-DSEEEQPSHD 1381
>AY861435-1|AAX56125.1| 1065|Homo sapiens protocadherin 11X isoform
5 protein.
Length = 1065
Score = 31.5 bits (68), Expect = 4.4
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 7 LLQNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGG---GDASIKINENMPGE 63
+L ++ D+ G+I P S R+ ++KAEDGG +S K+ N+
Sbjct: 609 ILDENDDFTIDSQTGVI--RPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDV 666
Query: 64 NSGKPKFV 71
N KP F+
Sbjct: 667 NDNKPVFI 674
>AY861434-1|AAX56124.1| 1329|Homo sapiens protocadherin 11X isoform
6 protein.
Length = 1329
Score = 31.5 bits (68), Expect = 4.4
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 7 LLQNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGG---GDASIKINENMPGE 63
+L ++ D+ G+I P S R+ ++KAEDGG +S K+ N+
Sbjct: 609 ILDENDDFTIDSQTGVI--RPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDV 666
Query: 64 NSGKPKFV 71
N KP F+
Sbjct: 667 NDNKPVFI 674
>AY861433-1|AAX56123.1| 1310|Homo sapiens protocadherin 11X isoform
7 protein.
Length = 1310
Score = 31.5 bits (68), Expect = 4.4
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 7 LLQNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGG---GDASIKINENMPGE 63
+L ++ D+ G+I P S R+ ++KAEDGG +S K+ N+
Sbjct: 609 ILDENDDFTIDSQTGVI--RPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDV 666
Query: 64 NSGKPKFV 71
N KP F+
Sbjct: 667 NDNKPVFI 674
>AY861432-1|AAX56122.1| 1339|Homo sapiens protocadherin 11X isoform
8 protein.
Length = 1339
Score = 31.5 bits (68), Expect = 4.4
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 7 LLQNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGG---GDASIKINENMPGE 63
+L ++ D+ G+I P S R+ ++KAEDGG +S K+ N+
Sbjct: 609 ILDENDDFTIDSQTGVI--RPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDV 666
Query: 64 NSGKPKFV 71
N KP F+
Sbjct: 667 NDNKPVFI 674
>AL133321-2|CAI41436.1| 1337|Homo sapiens protocadherin 11 X-linked
protein.
Length = 1337
Score = 31.5 bits (68), Expect = 4.4
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 7 LLQNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGG---GDASIKINENMPGE 63
+L ++ D+ G+I P S R+ ++KAEDGG +S K+ N+
Sbjct: 609 ILDENDDFTIDSQTGVI--RPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDV 666
Query: 64 NSGKPKFV 71
N KP F+
Sbjct: 667 NDNKPVFI 674
>AL133321-1|CAI41435.1| 1347|Homo sapiens protocadherin 11 X-linked
protein.
Length = 1347
Score = 31.5 bits (68), Expect = 4.4
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 7 LLQNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGG---GDASIKINENMPGE 63
+L ++ D+ G+I P S R+ ++KAEDGG +S K+ N+
Sbjct: 609 ILDENDDFTIDSQTGVI--RPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDV 666
Query: 64 NSGKPKFV 71
N KP F+
Sbjct: 667 NDNKPVFI 674
>AL133274-3|CAI41629.1| 1310|Homo sapiens protocadherin 11 X-linked
protein.
Length = 1310
Score = 31.5 bits (68), Expect = 4.4
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 7 LLQNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGG---GDASIKINENMPGE 63
+L ++ D+ G+I P S R+ ++KAEDGG +S K+ N+
Sbjct: 609 ILDENDDFTIDSQTGVI--RPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDV 666
Query: 64 NSGKPKFV 71
N KP F+
Sbjct: 667 NDNKPVFI 674
>AL133274-2|CAI41631.1| 1337|Homo sapiens protocadherin 11 X-linked
protein.
Length = 1337
Score = 31.5 bits (68), Expect = 4.4
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 7 LLQNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGG---GDASIKINENMPGE 63
+L ++ D+ G+I P S R+ ++KAEDGG +S K+ N+
Sbjct: 609 ILDENDDFTIDSQTGVI--RPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDV 666
Query: 64 NSGKPKFV 71
N KP F+
Sbjct: 667 NDNKPVFI 674
>AL133274-1|CAI41630.1| 1347|Homo sapiens protocadherin 11 X-linked
protein.
Length = 1347
Score = 31.5 bits (68), Expect = 4.4
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 7 LLQNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGG---GDASIKINENMPGE 63
+L ++ D+ G+I P S R+ ++KAEDGG +S K+ N+
Sbjct: 609 ILDENDDFTIDSQTGVI--RPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDV 666
Query: 64 NSGKPKFV 71
N KP F+
Sbjct: 667 NDNKPVFI 674
>AL121869-5|CAI41414.1| 1337|Homo sapiens protocadherin 11 X-linked
protein.
Length = 1337
Score = 31.5 bits (68), Expect = 4.4
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 7 LLQNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGG---GDASIKINENMPGE 63
+L ++ D+ G+I P S R+ ++KAEDGG +S K+ N+
Sbjct: 609 ILDENDDFTIDSQTGVI--RPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDV 666
Query: 64 NSGKPKFV 71
N KP F+
Sbjct: 667 NDNKPVFI 674
>AL121869-4|CAI41413.1| 1347|Homo sapiens protocadherin 11 X-linked
protein.
Length = 1347
Score = 31.5 bits (68), Expect = 4.4
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 7 LLQNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGG---GDASIKINENMPGE 63
+L ++ D+ G+I P S R+ ++KAEDGG +S K+ N+
Sbjct: 609 ILDENDDFTIDSQTGVI--RPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDV 666
Query: 64 NSGKPKFV 71
N KP F+
Sbjct: 667 NDNKPVFI 674
>AL121869-3|CAI41412.1| 1310|Homo sapiens protocadherin 11 X-linked
protein.
Length = 1310
Score = 31.5 bits (68), Expect = 4.4
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 7 LLQNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGG---GDASIKINENMPGE 63
+L ++ D+ G+I P S R+ ++KAEDGG +S K+ N+
Sbjct: 609 ILDENDDFTIDSQTGVI--RPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDV 666
Query: 64 NSGKPKFV 71
N KP F+
Sbjct: 667 NDNKPVFI 674
>AJ564963-1|CAD92434.1| 787|Homo sapiens protocadherin protein.
Length = 787
Score = 31.5 bits (68), Expect = 4.4
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 7 LLQNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGG---GDASIKINENMPGE 63
+L ++ D+ G+I P S R+ ++KAEDGG +S K+ N+
Sbjct: 429 ILDENDDFTIDSQTGVI--RPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDV 486
Query: 64 NSGKPKFV 71
N KP F+
Sbjct: 487 NDNKPVFI 494
>AJ564962-1|CAD92433.1| 762|Homo sapiens protocadherin protein.
Length = 762
Score = 31.5 bits (68), Expect = 4.4
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 7 LLQNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGG---GDASIKINENMPGE 63
+L ++ D+ G+I P S R+ ++KAEDGG +S K+ N+
Sbjct: 429 ILDENDDFTIDSQTGVI--RPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDV 486
Query: 64 NSGKPKFV 71
N KP F+
Sbjct: 487 NDNKPVFI 494
>AJ564961-1|CAD92432.1| 841|Homo sapiens protocadherin protein.
Length = 841
Score = 31.5 bits (68), Expect = 4.4
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 7 LLQNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGG---GDASIKINENMPGE 63
+L ++ D+ G+I P S R+ ++KAEDGG +S K+ N+
Sbjct: 429 ILDENDDFTIDSQTGVI--RPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDV 486
Query: 64 NSGKPKFV 71
N KP F+
Sbjct: 487 NDNKPVFI 494
>AJ564960-1|CAD92431.1| 831|Homo sapiens protocadherin protein.
Length = 831
Score = 31.5 bits (68), Expect = 4.4
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 7 LLQNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGG---GDASIKINENMPGE 63
+L ++ D+ G+I P S R+ ++KAEDGG +S K+ N+
Sbjct: 429 ILDENDDFTIDSQTGVI--RPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDV 486
Query: 64 NSGKPKFV 71
N KP F+
Sbjct: 487 NDNKPVFI 494
>AJ564936-1|CAD92415.1| 787|Homo sapiens protocadherin protein.
Length = 787
Score = 31.5 bits (68), Expect = 4.4
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 7 LLQNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGG---GDASIKINENMPGE 63
+L ++ D+ G+I P S R+ ++KAEDGG +S K+ N+
Sbjct: 429 ILDENDDFTIDSQTGVI--RPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDV 486
Query: 64 NSGKPKFV 71
N KP F+
Sbjct: 487 NDNKPVFI 494
>AJ564935-1|CAD92414.1| 762|Homo sapiens protocadherin protein.
Length = 762
Score = 31.5 bits (68), Expect = 4.4
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 7 LLQNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGG---GDASIKINENMPGE 63
+L ++ D+ G+I P S R+ ++KAEDGG +S K+ N+
Sbjct: 429 ILDENDDFTIDSQTGVI--RPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDV 486
Query: 64 NSGKPKFV 71
N KP F+
Sbjct: 487 NDNKPVFI 494
>AJ564934-1|CAD92413.1| 841|Homo sapiens protocadherin protein.
Length = 841
Score = 31.5 bits (68), Expect = 4.4
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 7 LLQNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGG---GDASIKINENMPGE 63
+L ++ D+ G+I P S R+ ++KAEDGG +S K+ N+
Sbjct: 429 ILDENDDFTIDSQTGVI--RPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDV 486
Query: 64 NSGKPKFV 71
N KP F+
Sbjct: 487 NDNKPVFI 494
>AJ564933-1|CAD92412.1| 831|Homo sapiens protocadherin protein.
Length = 831
Score = 31.5 bits (68), Expect = 4.4
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 7 LLQNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGG---GDASIKINENMPGE 63
+L ++ D+ G+I P S R+ ++KAEDGG +S K+ N+
Sbjct: 429 ILDENDDFTIDSQTGVI--RPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDV 486
Query: 64 NSGKPKFV 71
N KP F+
Sbjct: 487 NDNKPVFI 494
>AJ276804-1|CAC13123.1| 1025|Homo sapiens protocadherin protein.
Length = 1025
Score = 31.5 bits (68), Expect = 4.4
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 7 LLQNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGG---GDASIKINENMPGE 63
+L ++ D+ G+I P S R+ ++KAEDGG +S K+ N+
Sbjct: 609 ILDENDDFTIDSQTGVI--RPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDV 666
Query: 64 NSGKPKFV 71
N KP F+
Sbjct: 667 NDNKPVFI 674
>AJ276803-1|CAC13122.1| 1037|Homo sapiens protocadherin protein.
Length = 1037
Score = 31.5 bits (68), Expect = 4.4
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 7 LLQNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGG---GDASIKINENMPGE 63
+L ++ D+ G+I P S R+ ++KAEDGG +S K+ N+
Sbjct: 630 ILDENDDFTIDSQTGVI--RPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDV 687
Query: 64 NSGKPKFV 71
N KP F+
Sbjct: 688 NDNKPVFI 695
>AF332219-1|AAK13471.1| 1337|Homo sapiens protocadherin 11 protein.
Length = 1337
Score = 31.5 bits (68), Expect = 4.4
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 7 LLQNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGG---GDASIKINENMPGE 63
+L ++ D+ G+I P S R+ ++KAEDGG +S K+ N+
Sbjct: 609 ILDENDDFTIDSQTGVI--RPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDV 666
Query: 64 NSGKPKFV 71
N KP F+
Sbjct: 667 NDNKPVFI 674
>AF332218-1|AAK13470.1| 1347|Homo sapiens protocadherin 11 protein.
Length = 1347
Score = 31.5 bits (68), Expect = 4.4
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 7 LLQNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGG---GDASIKINENMPGE 63
+L ++ D+ G+I P S R+ ++KAEDGG +S K+ N+
Sbjct: 609 ILDENDDFTIDSQTGVI--RPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDV 666
Query: 64 NSGKPKFV 71
N KP F+
Sbjct: 667 NDNKPVFI 674
>AF332217-1|AAK13469.1| 1340|Homo sapiens protocadherin 11 protein.
Length = 1340
Score = 31.5 bits (68), Expect = 4.4
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 7 LLQNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGG---GDASIKINENMPGE 63
+L ++ D+ G+I P S R+ ++KAEDGG +S K+ N+
Sbjct: 641 ILDENDDFTIDSQTGVI--RPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDV 698
Query: 64 NSGKPKFV 71
N KP F+
Sbjct: 699 NDNKPVFI 706
>AF332216-1|AAK13468.1| 1048|Homo sapiens protocadherin 11 protein.
Length = 1048
Score = 31.5 bits (68), Expect = 4.4
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 7 LLQNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGG---GDASIKINENMPGE 63
+L ++ D+ G+I P S R+ ++KAEDGG +S K+ N+
Sbjct: 641 ILDENDDFTIDSQTGVI--RPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDV 698
Query: 64 NSGKPKFV 71
N KP F+
Sbjct: 699 NDNKPVFI 706
>AF277053-1|AAL55729.1| 1037|Homo sapiens protocadherin-PC protein.
Length = 1037
Score = 31.5 bits (68), Expect = 4.4
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 7 LLQNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGG---GDASIKINENMPGE 63
+L ++ D+ G+I P S R+ ++KAEDGG +S K+ N+
Sbjct: 630 ILDENDDFTIDSQTGVI--RPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDV 687
Query: 64 NSGKPKFV 71
N KP F+
Sbjct: 688 NDNKPVFI 695
>AF217288-1|AAK82656.1| 1310|Homo sapiens protocadherin-S protein.
Length = 1310
Score = 31.5 bits (68), Expect = 4.4
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 7 LLQNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGG---GDASIKINENMPGE 63
+L ++ D+ G+I P S R+ ++KAEDGG +S K+ N+
Sbjct: 609 ILDENDDFTIDSQTGVI--RPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDV 666
Query: 64 NSGKPKFV 71
N KP F+
Sbjct: 667 NDNKPVFI 674
>AF206516-1|AAK82655.1| 1347|Homo sapiens protocadherin-S protein.
Length = 1347
Score = 31.5 bits (68), Expect = 4.4
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 7 LLQNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGG---GDASIKINENMPGE 63
+L ++ D+ G+I P S R+ ++KAEDGG +S K+ N+
Sbjct: 609 ILDENDDFTIDSQTGVI--RPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDV 666
Query: 64 NSGKPKFV 71
N KP F+
Sbjct: 667 NDNKPVFI 674
>AB026187-1|BAA90765.1| 1021|Homo sapiens protocadherin-Xa protein.
Length = 1021
Score = 31.5 bits (68), Expect = 4.4
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 7 LLQNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGG---GDASIKINENMPGE 63
+L ++ D+ G+I P S R+ ++KAEDGG +S K+ N+
Sbjct: 609 ILDENDDFTIDSQTGVI--RPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDV 666
Query: 64 NSGKPKFV 71
N KP F+
Sbjct: 667 NDNKPVFI 674
>AB020626-1|BAA74842.1| 989|Homo sapiens KIAA0819 protein protein.
Length = 989
Score = 31.5 bits (68), Expect = 4.4
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 9 QNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGGGDASIKINENMPGENSGKP 68
Q E +P + + +P++K + T+E L ++ GG D S +E G+ S K
Sbjct: 628 QGKERRPDSPTRPTLRGSEEPTLKHEATSEEVLSPPSDSGGPDGSFTSSEGSSGK-SKKR 686
Query: 69 KFVTSTPDEKKESPSENQ 86
+ S KKE S+ +
Sbjct: 687 SSLFSPRRNKKEKKSKGE 704
>BC006562-1|AAH06562.2| 377|Homo sapiens MICAL3 protein protein.
Length = 377
Score = 30.7 bits (66), Expect = 7.7
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 9 QNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGGGDASIKINENMPGENSGKP 68
Q E +P + + +P++K + T+E L ++ GG D S +E G+ S K
Sbjct: 16 QGKERRPDSPTRPTLRGSEEPTLKHEATSEEVLSPPSDSGGPDGSFTSSEGSSGK-SKKR 74
Query: 69 KFVTSTPDEKKESPSE 84
+ S KKE S+
Sbjct: 75 SSLFSPRRNKKEKKSK 90
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.317 0.135 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,886,176
Number of Sequences: 224733
Number of extensions: 2052920
Number of successful extensions: 4508
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 4495
Number of HSP's gapped (non-prelim): 46
length of query: 339
length of database: 73,234,838
effective HSP length: 90
effective length of query: 249
effective length of database: 53,008,868
effective search space: 13199208132
effective search space used: 13199208132
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 66 (30.7 bits)
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