Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000288-TA|BGIBMGA000288-PA|IPR002816|TraB determinant
(339 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U70854-4|AAP40536.1| 452|Caenorhabditis elegans Hypothetical pr... 173 1e-43
U70854-3|AAP40537.1| 450|Caenorhabditis elegans Hypothetical pr... 173 1e-43
U41270-3|ABC71846.1| 254|Caenorhabditis elegans Hypothetical pr... 33 0.38
U41534-6|AAB47598.1| 375|Caenorhabditis elegans Hypothetical pr... 32 0.51
Z69637-5|CAA93470.2| 315|Caenorhabditis elegans Hypothetical pr... 31 0.89
Z92784-7|CAE54895.1| 808|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z81526-9|CAE54892.1| 808|Caenorhabditis elegans Hypothetical pr... 31 1.2
AF002196-3|AAP68957.1| 916|Caenorhabditis elegans Hypothetical ... 30 2.7
AF002196-2|AAP68956.1| 915|Caenorhabditis elegans Hypothetical ... 30 2.7
AF002196-1|AAP68955.1| 913|Caenorhabditis elegans Hypothetical ... 30 2.7
Z81459-1|CAB03827.3| 731|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z79604-5|CAB97241.2| 731|Caenorhabditis elegans Hypothetical pr... 29 3.6
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr... 29 6.2
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 6.2
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 6.2
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 28 8.3
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 28 8.3
U58760-5|AAK31464.1| 1076|Caenorhabditis elegans Hypothetical pr... 28 8.3
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 28 8.3
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 28 8.3
U29535-14|AAK31455.3| 516|Caenorhabditis elegans Hypothetical p... 28 8.3
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 28 8.3
AF000299-7|AAC47982.1| 168|Caenorhabditis elegans Hypothetical ... 28 8.3
>U70854-4|AAP40536.1| 452|Caenorhabditis elegans Hypothetical
protein F38A5.2a protein.
Length = 452
Score = 173 bits (421), Expect = 1e-43
Identities = 88/181 (48%), Positives = 117/181 (64%), Gaps = 1/181 (0%)
Query: 119 DGGKVIQEVKPHIVTVELCVQRTNILLLDEEVILREAKNINIKKIRATMAQNGVFNGLMY 178
D I+ V+P V +ELC R +I+ +DE +L EAK++N +KI TM QNG G+++
Sbjct: 173 DVSNTIRAVQPDFVMLELCPSRISIISMDEARLLSEAKDLNSQKIIQTMKQNGAIQGILH 232
Query: 179 ILLLNMSAHITRELGMAPGGEFRRAMAEAKKIPNCVVQLGDRAIDVTLHRAIASLSWGQT 238
+LLL+MSAH+TREL MAPGGEFR A A NC V LGDR I VTL RA+ASLS Q
Sbjct: 233 VLLLSMSAHVTRELSMAPGGEFRAAHRAAVATENCRVVLGDRPIQVTLQRALASLSIWQK 292
Query: 239 IRFIWHLLTSN-QTISLEEVEKCKQKKXXXXXXXXXXXXFPALKQVFVVERDMFLCHSLQ 297
IRF +H+ S+ + I+ EEVE+CKQ+ FP L Q+FV ERD ++ H+L
Sbjct: 293 IRFFFHVAFSHREKITAEEVERCKQRDLLEQLLAEMADDFPQLSQIFVEERDAYMTHALH 352
Query: 298 V 298
+
Sbjct: 353 M 353
>U70854-3|AAP40537.1| 450|Caenorhabditis elegans Hypothetical
protein F38A5.2b protein.
Length = 450
Score = 173 bits (421), Expect = 1e-43
Identities = 88/181 (48%), Positives = 117/181 (64%), Gaps = 1/181 (0%)
Query: 119 DGGKVIQEVKPHIVTVELCVQRTNILLLDEEVILREAKNINIKKIRATMAQNGVFNGLMY 178
D I+ V+P V +ELC R +I+ +DE +L EAK++N +KI TM QNG G+++
Sbjct: 171 DVSNTIRAVQPDFVMLELCPSRISIISMDEARLLSEAKDLNSQKIIQTMKQNGAIQGILH 230
Query: 179 ILLLNMSAHITRELGMAPGGEFRRAMAEAKKIPNCVVQLGDRAIDVTLHRAIASLSWGQT 238
+LLL+MSAH+TREL MAPGGEFR A A NC V LGDR I VTL RA+ASLS Q
Sbjct: 231 VLLLSMSAHVTRELSMAPGGEFRAAHRAAVATENCRVVLGDRPIQVTLQRALASLSIWQK 290
Query: 239 IRFIWHLLTSN-QTISLEEVEKCKQKKXXXXXXXXXXXXFPALKQVFVVERDMFLCHSLQ 297
IRF +H+ S+ + I+ EEVE+CKQ+ FP L Q+FV ERD ++ H+L
Sbjct: 291 IRFFFHVAFSHREKITAEEVERCKQRDLLEQLLAEMADDFPQLSQIFVEERDAYMTHALH 350
Query: 298 V 298
+
Sbjct: 351 M 351
>U41270-3|ABC71846.1| 254|Caenorhabditis elegans Hypothetical
protein AH9.3 protein.
Length = 254
Score = 32.7 bits (71), Expect = 0.38
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 47 DGGGDASIK--INENMPGENSGK-PKFVTSTPDEKKESPSENQIADSNPECDMEGVPELP 103
DG D S+K + E + E +G PK T+T E E S ++ A+ N ME P+
Sbjct: 25 DGPEDLSVKKEVQEAVKTEEAGSSPKATTTTDGEVPEKDSADENAEKNQVDSMEN-PK-- 81
Query: 104 LDEGLPSTVTVLDAPDGGKVIQE 126
+EG+ + +D+ D K Q+
Sbjct: 82 TEEGIVTADEKVDSSDDNKNAQK 104
>U41534-6|AAB47598.1| 375|Caenorhabditis elegans Hypothetical
protein C16A3.4 protein.
Length = 375
Score = 32.3 bits (70), Expect = 0.51
Identities = 38/132 (28%), Positives = 54/132 (40%), Gaps = 19/132 (14%)
Query: 18 NSDGIIFAPPKPSVKRDIT----NECQLFIKAEDGGGD--ASIKINENM----------P 61
N F P KP V + C+ IK+E+ D AS K EN P
Sbjct: 51 NEKAASFNPTKPVVAASVEPLYCKACRKSIKSENAMTDHVASKKHKENEKKIEDDVKKGP 110
Query: 62 GENSGKPKFVTSTPDEKKESPSENQIADSNPECD--MEGVPELPLDEGLPSTVTVLDAPD 119
+ KP+ + P+ KE ++ S E D EGV EL D+ LP T + L P
Sbjct: 111 KQPRKKPENLPKKPESLKEPENDEDDDSSGWETDDEEEGVEELNEDDALPVT-SCLFCPQ 169
Query: 120 GGKVIQEVKPHI 131
+ E++ H+
Sbjct: 170 TKPNMDEMRTHM 181
>Z69637-5|CAA93470.2| 315|Caenorhabditis elegans Hypothetical
protein F35G2.5a protein.
Length = 315
Score = 31.5 bits (68), Expect = 0.89
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 53 SIKINENMPGENSGKPKFVTSTPDEK-KESPSENQIADSNPECDMEGVPELPLDEGLPS 110
++ I ++P SG+ + S D+K K+ E Q+ PE D E + + L+E + S
Sbjct: 106 NLSIKRDIPLNESGEKLTIDSFYDDKLKQKQEEEQVVVPRPEIDNEEITTINLEERMNS 164
>Z92784-7|CAE54895.1| 808|Caenorhabditis elegans Hypothetical
protein F31C3.2b protein.
Length = 808
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 76 DEKKESPSENQIADSNPECDMEGVPELP--LDEGLPSTVTVLDAPDGGKVIQEVKPHIVT 133
D+K S SE++I D E D E L+E + +++A D G ++EV +++
Sbjct: 336 DKKDVSGSEDEIGDIVDEWDANDEEEKTDELEELEDDDIQIIEAGDQGNGVEEVSSTVIS 395
Query: 134 VE 135
VE
Sbjct: 396 VE 397
>Z81526-9|CAE54892.1| 808|Caenorhabditis elegans Hypothetical
protein F31C3.2b protein.
Length = 808
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 76 DEKKESPSENQIADSNPECDMEGVPELP--LDEGLPSTVTVLDAPDGGKVIQEVKPHIVT 133
D+K S SE++I D E D E L+E + +++A D G ++EV +++
Sbjct: 336 DKKDVSGSEDEIGDIVDEWDANDEEEKTDELEELEDDDIQIIEAGDQGNGVEEVSSTVIS 395
Query: 134 VE 135
VE
Sbjct: 396 VE 397
>AF002196-3|AAP68957.1| 916|Caenorhabditis elegans Hypothetical
protein C09D4.4c protein.
Length = 916
Score = 29.9 bits (64), Expect = 2.7
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 47 DGGGDASIKINENMPGENSGKPKFVTSTPDEKKESP--SENQIADSNPECDM---EGVPE 101
DGGG +K N EN+ P+F + D ESP S IA +P + E
Sbjct: 455 DGGGGLLLKNIPNSQ-ENNFSPEFPGPSRDTATESPSCSSEPIASPSPSSEFGRCSAAGE 513
Query: 102 LPLDEGLP 109
L D+G+P
Sbjct: 514 LFQDDGIP 521
>AF002196-2|AAP68956.1| 915|Caenorhabditis elegans Hypothetical
protein C09D4.4b protein.
Length = 915
Score = 29.9 bits (64), Expect = 2.7
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 47 DGGGDASIKINENMPGENSGKPKFVTSTPDEKKESP--SENQIADSNPECDM---EGVPE 101
DGGG +K N EN+ P+F + D ESP S IA +P + E
Sbjct: 454 DGGGGLLLKNIPNSQ-ENNFSPEFPGPSRDTATESPSCSSEPIASPSPSSEFGRCSAAGE 512
Query: 102 LPLDEGLP 109
L D+G+P
Sbjct: 513 LFQDDGIP 520
>AF002196-1|AAP68955.1| 913|Caenorhabditis elegans Hypothetical
protein C09D4.4a protein.
Length = 913
Score = 29.9 bits (64), Expect = 2.7
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 47 DGGGDASIKINENMPGENSGKPKFVTSTPDEKKESP--SENQIADSNPECDM---EGVPE 101
DGGG +K N EN+ P+F + D ESP S IA +P + E
Sbjct: 452 DGGGGLLLKNIPNSQ-ENNFSPEFPGPSRDTATESPSCSSEPIASPSPSSEFGRCSAAGE 510
Query: 102 LPLDEGLP 109
L D+G+P
Sbjct: 511 LFQDDGIP 518
>Z81459-1|CAB03827.3| 731|Caenorhabditis elegans Hypothetical
protein C03H12.1 protein.
Length = 731
Score = 29.5 bits (63), Expect = 3.6
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 156 KNINIKKIRATMAQNGVFNGLMYILLLNMSAHITRELGMAPGGEFRRAMAE 206
+ N+K+ A MAQN G +Y L+ S ++TR L G FR A+
Sbjct: 199 RKYNLKQYPAMMAQNSALMGSVYNGPLD-SVYVTRWLNRLQNGVFRLQSAQ 248
>Z79604-5|CAB97241.2| 731|Caenorhabditis elegans Hypothetical
protein C03H12.1 protein.
Length = 731
Score = 29.5 bits (63), Expect = 3.6
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 156 KNINIKKIRATMAQNGVFNGLMYILLLNMSAHITRELGMAPGGEFRRAMAE 206
+ N+K+ A MAQN G +Y L+ S ++TR L G FR A+
Sbjct: 199 RKYNLKQYPAMMAQNSALMGSVYNGPLD-SVYVTRWLNRLQNGVFRLQSAQ 248
>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
ZK783.1 protein.
Length = 2585
Score = 29.1 bits (62), Expect = 4.7
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 46 EDGGGDASIKINENMPGENSGKPKFVTSTPDEKKESPSENQIADSNPECDMEGVPELPLD 105
E G G+A + + + GE+S TS PD SP+ + A P P+ +
Sbjct: 1266 EGGSGEAGVPESPDGSGESS------TSAPDGV--SPTSSATAPEVPTTSASSTPDAVEE 1317
Query: 106 EGLPST 111
G+PST
Sbjct: 1318 SGIPST 1323
>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical
protein F36F2.3a protein.
Length = 1128
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 43 IKAEDGGGDASIKINENMPGENSGKPK--FVTSTPDEKKESPSENQIADSNPECDM 96
++A+D GDA + E+S PK V+ PDE E ++ + D + ++
Sbjct: 641 VQAQDTDGDAQVADENAQNDEDSTSPKEESVSPKPDETHEEDADEEPVDEEMDTEV 696
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 76 DEKKESPSENQIADSNPECDMEGVPELPLDEGLPSTVTVLD 116
DE SP E ++ E E E P+DE + + V V D
Sbjct: 660 DEDSTSPKEESVSPKPDETHEEDADEEPVDEEMDTEVVVRD 700
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 44 KAEDGGGDASIKINENMPGENSGKPKFVTSTPDEKKESPSENQIADSNPECDMEGVPELP 103
K+ D D+++ + G++ KPK +KKE+P Q+ + PE + + E+
Sbjct: 12544 KSVDEVDDSTVLEEKKDDGDDKSKPK-TKKKIIKKKETPESEQVTAAEPE--QQKISEVD 12600
Query: 104 LDEGLPSTVTVLDAPDGGK 122
+ + V PD K
Sbjct: 12601 VQSVAETEVGAKKKPDAEK 12619
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 44 KAEDGGGDASIKINENMPGENSGKPKFVTSTPDEKKESPSENQIADSNPECDMEGVPELP 103
K+ D D+++ + G++ KPK +KKE+P Q+ + PE + + E+
Sbjct: 12544 KSVDEVDDSTVLEEKKDDGDDKSKPK-TKKKIIKKKETPESEQVTAAEPE--QQKISEVD 12600
Query: 104 LDEGLPSTVTVLDAPDGGK 122
+ + V PD K
Sbjct: 12601 VQSVAETEVGAKKKPDAEK 12619
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 28.3 bits (60), Expect = 8.3
Identities = 28/109 (25%), Positives = 38/109 (34%), Gaps = 9/109 (8%)
Query: 17 DNSDGIIFAPPKPSVKRDITNECQLFIKAEDGGGDASIKINENMPGENS-----GKPKFV 71
D DG+ P P K D C A G+ + PG G P V
Sbjct: 513 DGRDGVNGLPGAPGTKGDRGGTCSAC--APGTKGEKGLPGYSGQPGPQGDRGLPGMPGPV 570
Query: 72 TSTPDEKKESPSENQIADSNPECDMEGVPELPLDEGLPSTVTVLDAPDG 120
D+ P+ + P D G P LP +G P+ +T+ P G
Sbjct: 571 GDAGDDGLPGPAGRPGSPGPPGQD--GFPGLPGQKGEPTQLTLRPGPPG 617
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 28.3 bits (60), Expect = 8.3
Identities = 28/109 (25%), Positives = 38/109 (34%), Gaps = 9/109 (8%)
Query: 17 DNSDGIIFAPPKPSVKRDITNECQLFIKAEDGGGDASIKINENMPGENS-----GKPKFV 71
D DG+ P P K D C A G+ + PG G P V
Sbjct: 512 DGRDGVNGLPGAPGTKGDRGGTCSAC--APGTKGEKGLPGYSGQPGPQGDRGLPGMPGPV 569
Query: 72 TSTPDEKKESPSENQIADSNPECDMEGVPELPLDEGLPSTVTVLDAPDG 120
D+ P+ + P D G P LP +G P+ +T+ P G
Sbjct: 570 GDAGDDGLPGPAGRPGSPGPPGQD--GFPGLPGQKGEPTQLTLRPGPPG 616
>U58760-5|AAK31464.1| 1076|Caenorhabditis elegans Hypothetical
protein C27A2.1 protein.
Length = 1076
Score = 28.3 bits (60), Expect = 8.3
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 74 TPDEKKESPSENQIADSNPECDMEG-VPE--LPLDEGLPSTVTVL----DAPDGGKVIQE 126
T DE K SP+EN+I S + E VP LD+ + S T L D+ + G ++ E
Sbjct: 802 TLDESKMSPAENKIYSSLVKMFEEADVPTDMNTLDQAITSEKTRLKLAEDSGEDGSIVHE 861
Query: 127 VKPHIVTVELCVQRT 141
+ ++ +L +++T
Sbjct: 862 QRLKVLDDDLVLEKT 876
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 28.3 bits (60), Expect = 8.3
Identities = 28/109 (25%), Positives = 38/109 (34%), Gaps = 9/109 (8%)
Query: 17 DNSDGIIFAPPKPSVKRDITNECQLFIKAEDGGGDASIKINENMPGENS-----GKPKFV 71
D DG+ P P K D C A G+ + PG G P V
Sbjct: 512 DGRDGVNGLPGAPGTKGDRGGTCSAC--APGTKGEKGLPGYSGQPGPQGDRGLPGMPGPV 569
Query: 72 TSTPDEKKESPSENQIADSNPECDMEGVPELPLDEGLPSTVTVLDAPDG 120
D+ P+ + P D G P LP +G P+ +T+ P G
Sbjct: 570 GDAGDDGLPGPAGRPGSPGPPGQD--GFPGLPGQKGEPTQLTLRPGPPG 616
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 28.3 bits (60), Expect = 8.3
Identities = 28/109 (25%), Positives = 38/109 (34%), Gaps = 9/109 (8%)
Query: 17 DNSDGIIFAPPKPSVKRDITNECQLFIKAEDGGGDASIKINENMPGENS-----GKPKFV 71
D DG+ P P K D C A G+ + PG G P V
Sbjct: 513 DGRDGVNGLPGAPGTKGDRGGTCSAC--APGTKGEKGLPGYSGQPGPQGDRGLPGMPGPV 570
Query: 72 TSTPDEKKESPSENQIADSNPECDMEGVPELPLDEGLPSTVTVLDAPDG 120
D+ P+ + P D G P LP +G P+ +T+ P G
Sbjct: 571 GDAGDDGLPGPAGRPGSPGPPGQD--GFPGLPGQKGEPTQLTLRPGPPG 617
>U29535-14|AAK31455.3| 516|Caenorhabditis elegans Hypothetical
protein C25H3.4 protein.
Length = 516
Score = 28.3 bits (60), Expect = 8.3
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 76 DEKKESPSENQIADSNPECDMEGVP------ELPLDEGLPSTVTVLDAPDGGKVIQEVKP 129
+EK+E E + + C + G+ +LP+D G T VL G+ + K
Sbjct: 228 EEKQEVIQEEPMENLLTRCFLAGLKHRFTRNQLPMDVGQFYTQCVLSCVPDGRRLDMKKT 287
Query: 130 HIVTVELCVQRTNILLLDEEVILREA 155
H +Q N L + +E I+ EA
Sbjct: 288 HFKKFATFLQEINELEITDERIVDEA 313
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 28.3 bits (60), Expect = 8.3
Identities = 28/109 (25%), Positives = 38/109 (34%), Gaps = 9/109 (8%)
Query: 17 DNSDGIIFAPPKPSVKRDITNECQLFIKAEDGGGDASIKINENMPGENS-----GKPKFV 71
D DG+ P P K D C A G+ + PG G P V
Sbjct: 549 DGRDGVNGLPGAPGTKGDRGGTCSAC--APGTKGEKGLPGYSGQPGPQGDRGLPGMPGPV 606
Query: 72 TSTPDEKKESPSENQIADSNPECDMEGVPELPLDEGLPSTVTVLDAPDG 120
D+ P+ + P D G P LP +G P+ +T+ P G
Sbjct: 607 GDAGDDGLPGPAGRPGSPGPPGQD--GFPGLPGQKGEPTQLTLRPGPPG 653
>AF000299-7|AAC47982.1| 168|Caenorhabditis elegans Hypothetical
protein E03H12.7 protein.
Length = 168
Score = 28.3 bits (60), Expect = 8.3
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 44 KAEDGGGDASIKINENMPGENSGKPKFVTSTP--------DEKKESPSENQIADSNPECD 95
K + S K++ P +++ KP TP DEKKE P +++ +P D
Sbjct: 30 KKKPSNASPSKKMSSAEPAKSAIKPPITDPTPSALAKVGSDEKKEEPKDDKGDTKSPAPD 89
Query: 96 MEGVPELPLDE 106
+ P+D+
Sbjct: 90 GDAAAAKPVDQ 100
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.317 0.135 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,158,496
Number of Sequences: 27539
Number of extensions: 345925
Number of successful extensions: 974
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 966
Number of HSP's gapped (non-prelim): 32
length of query: 339
length of database: 12,573,161
effective HSP length: 82
effective length of query: 257
effective length of database: 10,314,963
effective search space: 2650945491
effective search space used: 2650945491
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)
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