GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000288-TA|BGIBMGA000288-PA|IPR002816|TraB determinant
         (339 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.71 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   6.6  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   6.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.4 bits (53), Expect = 0.71
 Identities = 40/165 (24%), Positives = 70/165 (42%), Gaps = 27/165 (16%)

Query: 93  ECDMEGVPELPLDEGLPSTVTVLDAPDGGKVIQEVKPHIVTVELCVQRTNILLLDEEVIL 152
           +C   GV E+P    + +T   LD    G V++E++ H+      + R N+ +L      
Sbjct: 779 DCSGLGVEEIPRRIPMDATEVYLD----GNVLRELQNHVF-----IGRKNMRVL------ 823

Query: 153 REAKNINIKKIRATMAQNGVFNGLMYILLLNMSAHITRELGMAPGGEFRRA--MAEAKKI 210
                +N   I +   QN  FNGL  + +L++  +  REL    G EF R   + E    
Sbjct: 824 ----YVNGSGIESI--QNRTFNGLNNLQILHLEDNRIREL---KGFEFERLSHLRELYLQ 874

Query: 211 PNCVVQLGDRAIDVTLHRAIASLSWGQTIRF-IWHLLTSNQTISL 254
            N +  +G+          I  LS  + + F +W +  + + + L
Sbjct: 875 NNLIGFIGNLTFLPLRSLEILRLSGNRLVTFPVWQVTLNARLVEL 919



 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 170 NGVFNGLMYILLLNMS 185
           NGVF  +  +LLLN+S
Sbjct: 542 NGVFTSIASLLLLNLS 557


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 284 FVVERDMFLCHSLQVAALQPRHEPCR 309
           F +ER + +CH L+V  +     P R
Sbjct: 135 FSMERYLAICHPLRVYTISGLKRPIR 160


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 8/22 (36%), Positives = 11/22 (50%)

Query: 62  GENSGKPKFVTSTPDEKKESPS 83
           G++   PKFV    +    SPS
Sbjct: 356 GQSQSSPKFVARREESNSSSPS 377


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.135    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,086
Number of Sequences: 429
Number of extensions: 3511
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 4
length of query: 339
length of database: 140,377
effective HSP length: 58
effective length of query: 281
effective length of database: 115,495
effective search space: 32454095
effective search space used: 32454095
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)