Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000288-TA|BGIBMGA000288-PA|IPR002816|TraB determinant
(339 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g05270.1 68414.m00533 TraB family protein contains Pfam domai... 56 3e-08
At5g52030.2 68418.m06456 TraB protein-related 52 7e-07
At5g52030.1 68418.m06457 TraB protein-related 52 7e-07
At3g13225.1 68416.m01660 WW domain-containing protein contains P... 34 0.12
At1g70620.1 68414.m08138 cyclin-related contains weak similarity... 31 0.83
At4g06490.1 68417.m00896 hypothetical protein 31 1.1
At1g27110.1 68414.m03304 hypothetical protein 30 1.9
At5g50780.1 68418.m06291 ATP-binding region, ATPase-like domain-... 30 2.5
At1g14180.2 68414.m01677 expressed protein 30 2.5
At1g14180.1 68414.m01676 expressed protein 29 3.4
At1g63210.1 68414.m07144 hypothetical protein contains Pfam prof... 29 4.4
At2g29600.1 68415.m03594 kelch repeat-containing F-box family pr... 29 5.9
At1g70620.2 68414.m08137 cyclin-related contains weak similarity... 29 5.9
At4g26190.1 68417.m03770 expressed protein 28 7.8
At4g04530.1 68417.m00660 Ulp1 protease family protein (snoR29) c... 28 7.8
At2g24930.1 68415.m02981 Ulp1 protease family protein contains P... 28 7.8
>At1g05270.1 68414.m00533 TraB family protein contains Pfam domain
PF01963: TraB family
Length = 371
Score = 56.0 bits (129), Expect = 3e-08
Identities = 54/179 (30%), Positives = 78/179 (43%), Gaps = 15/179 (8%)
Query: 123 VIQEVKPHIVTVELCVQRTNILLLDEEVILREAKNINIKKIRATMAQNGVFNGLMYILLL 182
+I +KP +V VELC R ++L I + I K + QN G++Y L
Sbjct: 130 IISILKPEVVFVELCSSRLSVLKPQTLKIPTMSDMIESWKQK----QNTF--GILYGWFL 183
Query: 183 NMSAHITRELGMAPGGEFRRAMAEAKKIPNCVVQLGDRAIDVTLHRAIASLSWGQTIRFI 242
A I L + PG EFR A EA K V+ LGDR + +TL R A + ++F+
Sbjct: 184 ---AKIASHLEVFPGAEFRVAYEEAIKYGGKVI-LGDRPVQITLKRTWAKMPLWHKVKFL 239
Query: 243 WHLLTSNQTI-SLEEVEKCKQK----KXXXXXXXXXXXXFPALKQVFVVERDMFLCHSL 296
+ +L + EE+EK + FP L V ERD ++ SL
Sbjct: 240 YSILFQAVFLPGAEELEKMLKDMDNVDMVTLVIQEMSKEFPTLMDTIVHERDQYMASSL 298
>At5g52030.2 68418.m06456 TraB protein-related
Length = 402
Score = 51.6 bits (118), Expect = 7e-07
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 6/124 (4%)
Query: 179 ILLLNMSAHITRELGMAPGGEFRRAMAEAKKIPNCVVQLGDRAIDVTLHRAIASLSWGQT 238
+LL S+ ++ G EFR A ++++ +V LGDR I++TL RA SL WG+
Sbjct: 190 LLLAVFSSKLSSVADRPFGDEFRAARKASEEVGAQLV-LGDRPIEITLQRAWNSLKWGEK 248
Query: 239 IRFIW---HLLTSNQTISLEEV--EKCKQKKXXXXXXXXXXXXFPALKQVFVVERDMFLC 293
+ ++TS+ IS E+ ++ + +PAL + ERD +L
Sbjct: 249 FNLVMAVTRVITSSSGISAAELKEQETDENSGSLQLYERLSFSYPALLMPLIHERDTYLA 308
Query: 294 HSLQ 297
SL+
Sbjct: 309 WSLK 312
>At5g52030.1 68418.m06457 TraB protein-related
Length = 258
Score = 51.6 bits (118), Expect = 7e-07
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 6/124 (4%)
Query: 179 ILLLNMSAHITRELGMAPGGEFRRAMAEAKKIPNCVVQLGDRAIDVTLHRAIASLSWGQT 238
+LL S+ ++ G EFR A ++++ +V LGDR I++TL RA SL WG+
Sbjct: 46 LLLAVFSSKLSSVADRPFGDEFRAARKASEEVGAQLV-LGDRPIEITLQRAWNSLKWGEK 104
Query: 239 IRFIW---HLLTSNQTISLEEV--EKCKQKKXXXXXXXXXXXXFPALKQVFVVERDMFLC 293
+ ++TS+ IS E+ ++ + +PAL + ERD +L
Sbjct: 105 FNLVMAVTRVITSSSGISAAELKEQETDENSGSLQLYERLSFSYPALLMPLIHERDTYLA 164
Query: 294 HSLQ 297
SL+
Sbjct: 165 WSLK 168
>At3g13225.1 68416.m01660 WW domain-containing protein contains Pfam
profile PF00397: WW domain
Length = 863
Score = 34.3 bits (75), Expect = 0.12
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 11/86 (12%)
Query: 44 KAEDGGGDASIKINENMPGENSGKPKFVTSTPDEKKESPSENQIADSNPECDMEGVPELP 103
++ DG GD S K + N P +G+ + ST E + + D + + DME +P
Sbjct: 426 ESADGSGDGSPKHSPNHP---AGQSDIIPST--EMLQKAGSPDVEDVDMDVDMEVEESVP 480
Query: 104 LDEGLPSTVTVLDAPDGGKVIQEVKP 129
+ S+V V+DA D GK+ + +P
Sbjct: 481 V-----SSVQVIDASD-GKMFSQTEP 500
>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 897
Score = 31.5 bits (68), Expect = 0.83
Identities = 33/147 (22%), Positives = 58/147 (39%), Gaps = 5/147 (3%)
Query: 17 DNSDGIIFAPPKPSVKRDITNECQLFIKAEDGGGDASIKINE--NMPGENSGKPKFVTST 74
D+S PPK + + E +L K D G +S + E +M + KP
Sbjct: 375 DDSYAASSVPPKKAPVPNWLKE-ELLKKKADLGRPSSGRFEERESMDDDVLYKPPTKADQ 433
Query: 75 PDEKKESPSENQIADSNPECDMEGVPELPLDEGLPSTVTVLDAPDGGKVIQEVKPHIVTV 134
PD+K SPS + + E D E+ ++ T +L D ++ E+ ++
Sbjct: 434 PDKKSFSPSNSSDEEEEDEMDAARTTEINMEIKRILTEVLLKVTD--ELFDEIATKVINE 491
Query: 135 ELCVQRTNILLLDEEVILREAKNINIK 161
+ + + + L IL + N K
Sbjct: 492 DEAIPKADPLHKASAKILVSVEGANTK 518
>At4g06490.1 68417.m00896 hypothetical protein
Length = 146
Score = 31.1 bits (67), Expect = 1.1
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 136 LCVQRTNILLLDEEVILREAKNINIKKIRATMAQNGVFNGLMYILLLNMSAHITRE---L 192
LCV +L D+E+ + K + ++ + TM + + + +LL ++A ITRE L
Sbjct: 46 LCVMIKGLLDRDQEIAMAFIKALAVQHQKRTMERRNIRKKINR-MLLRVTA-ITRELHNL 103
Query: 193 GMAPGGEFRRAMAEAKKIPNCVVQLGDRA 221
PG +++ +IP+C++ D A
Sbjct: 104 NSHPGDWIELGISKFARIPDCMMSNLDLA 132
>At1g27110.1 68414.m03304 hypothetical protein
Length = 475
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/74 (24%), Positives = 33/74 (44%)
Query: 164 RATMAQNGVFNGLMYILLLNMSAHITRELGMAPGGEFRRAMAEAKKIPNCVVQLGDRAID 223
+AT+ + VF + Y+L NM + EL +F + + K++ +G +
Sbjct: 55 KATLYEKAVFEAVSYLLSENMDDDVALELHSKLLKKFPKDLLSWKRVETLCSYMGRHDLS 114
Query: 224 VTLHRAIASLSWGQ 237
+ L R I + GQ
Sbjct: 115 LPLFRKILPQNEGQ 128
>At5g50780.1 68418.m06291 ATP-binding region, ATPase-like
domain-containing protein low similarity to microrchidia
[Homo sapiens] GI:5410257; contains Pfam profile
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein
Length = 823
Score = 29.9 bits (64), Expect = 2.5
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 47 DGGGDASIKINENM---PGENSGK--PKFVTSTPDEKKESPSENQIADSNPECDMEGVPE 101
+GGG S+K+++++ E GK F S K + ++ +S+ + D + PE
Sbjct: 638 NGGGKGSVKVSKDIGYKSSEKGGKLGNSFSKSNKRAKPQGARAVEVTNSDDDYDCDSSPE 697
Query: 102 LPLDEGLPSTVTVLDAPDGG 121
+ E LP + L P G
Sbjct: 698 RNVTE-LPGKSSELPKPQSG 716
>At1g14180.2 68414.m01677 expressed protein
Length = 242
Score = 29.9 bits (64), Expect = 2.5
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 35 ITNECQLFIKAEDGGGDASIKINENMPGENSGKPKFVTSTPDEKKESPSENQIADSNPEC 94
I N Q I + G ++ I ++ PG NS +F S P PS+N ++
Sbjct: 32 ILNLLQEEIVKQLPGTSRNVGIGDSEPGRNSSSRRFFLSKPVHPILHPSDNVRDTASDSA 91
Query: 95 DMEGVPELPLDEGLPSTVTVLDAPD 119
D G PS++ +D P+
Sbjct: 92 D-----ACSWSSGTPSSIDSVDVPE 111
>At1g14180.1 68414.m01676 expressed protein
Length = 245
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 49 GGDASIKINENMPGENSGKPKFVTSTPDEKKESPSENQIADSNPECDMEGVPELPLDEGL 108
G ++ I ++ PG NS +F S P PS+N ++ D G
Sbjct: 49 GTSRNVGIGDSEPGRNSSSRRFFLSKPVHPILHPSDNVRDTASDSAD-----ACSWSSGT 103
Query: 109 PSTVTVLDAPD 119
PS++ +D P+
Sbjct: 104 PSSIDSVDVPE 114
>At1g63210.1 68414.m07144 hypothetical protein contains Pfam
profile: PF04283 protein of unknown function (DUF439)
Length = 1197
Score = 29.1 bits (62), Expect = 4.4
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 77 EKKESPSENQIADSNPECDMEGVPELPLDEGLPSTVTVLDAPDGGKVIQEV-----KPHI 131
E KE+ E +I + + G + LD GLP + D D G+ I ++ + I
Sbjct: 884 ETKETIGEGRIVQATVKKVTSGKAKCVLDCGLPGILLKEDYSDDGRDIVDLSNKLCEGDI 943
Query: 132 VTVE---LCVQRTNILLLDEEVILREAKNI 158
VT + + QR ++LL+ +E +R+ +N+
Sbjct: 944 VTCKVKSILKQRYHVLLVCKESEMRKHRNL 973
>At2g29600.1 68415.m03594 kelch repeat-containing F-box family
protein similar to SKP1 interacting partner 6
[Arabidopsis thaliana] GI:10716957; contains Pfam
profiles PF01344: Kelch motif, PF00646: F-box domain
Length = 415
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 62 GENSGKPKFVTSTPDEKKESPSENQIA--DSNPECDMEGVPELP 103
G+ + KP+ P E KE ++N+ D + E ++E VP++P
Sbjct: 15 GDPNQKPEEPHKNPQEGKEEENQNEKPKEDDHQEEEVENVPQIP 58
>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 884
Score = 28.7 bits (61), Expect = 5.9
Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 5/126 (3%)
Query: 17 DNSDGIIFAPPKPSVKRDITNECQLFIKAEDGGGDASIKINE--NMPGENSGKPKFVTST 74
D+S PPK + + E +L K D G +S + E +M + KP
Sbjct: 388 DDSYAASSVPPKKAPVPNWLKE-ELLKKKADLGRPSSGRFEERESMDDDVLYKPPTKADQ 446
Query: 75 PDEKKESPSENQIADSNPECDMEGVPELPLDEGLPSTVTVLDAPDGGKVIQEVKPHIVTV 134
PD+K SPS + + E D E+ ++ T +L D ++ E+ ++
Sbjct: 447 PDKKSFSPSNSSDEEEEDEMDAARTTEINMEIKRILTEVLLKVTD--ELFDEIATKVINE 504
Query: 135 ELCVQR 140
+ + +
Sbjct: 505 DEAIPK 510
>At4g26190.1 68417.m03770 expressed protein
Length = 1067
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 46 EDGGGDASIKINENMPGENSGKPKFVTSTPDEKKESPSENQIADSNPECDMEGVPE 101
E GG D +IKI ++ E SG K ++KE + I + D EGV +
Sbjct: 565 EFGGEDMTIKIEKSATREKSGVQK-----SGKRKEMTKDKNIESNQDALDAEGVSD 615
>At4g04530.1 68417.m00660 Ulp1 protease family protein (snoR29)
contains Pfam profile PF02902: Ulp1 protease family,
C-terminal catalytic domain; snoR29 gene for small
nucleolar RNA GI:15706258
Length = 917
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 15 PRDNS-DGIIFAPPKPSVKRDITNECQLFIKAEDGGGDASIKINENMP 61
P+ S DGI+ PPK + ++DI +E Q+ A++ + NMP
Sbjct: 449 PKSTSGDGIVTPPPKAASQKDIADEGQISDPAKNLDPKIVPERQSNMP 496
>At2g24930.1 68415.m02981 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 926
Score = 28.3 bits (60), Expect = 7.8
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 195 APGGEFR-RAMAEAKKIPNCVVQLGDRAIDVTLHRAIASLSWGQTIRFIWHLLTSNQTIS 253
A GGE R R M E ++ D+ D L I L + ++ W + TS +
Sbjct: 262 ANGGELRVRTMVEKAELSELFHFWPDQLEDPALDNLIQDLHEVKLVKGYWDVKTSEKKKK 321
Query: 254 L---EEVEKCKQKK 264
L +E EK K+KK
Sbjct: 322 LLKDKEAEKKKEKK 335
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.135 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,818,047
Number of Sequences: 28952
Number of extensions: 325129
Number of successful extensions: 866
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 855
Number of HSP's gapped (non-prelim): 18
length of query: 339
length of database: 12,070,560
effective HSP length: 82
effective length of query: 257
effective length of database: 9,696,496
effective search space: 2491999472
effective search space used: 2491999472
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)
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