Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000287-TA|BGIBMGA000287-PA|IPR009180|Peptidase M22,
O-sialoglycoprotein endopeptidase, IPR000905|Peptidase M22,
glycoprotease
         (334 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14250| Best HMM Match : No HMM Matches (HMM E-Value=.)              75   1e-13
SB_14165| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   4e-11
SB_19608| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.57 
SB_2648| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.57 
SB_13855| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_20744| Best HMM Match : CH (HMM E-Value=0.92)                       29   4.0  
SB_14335| Best HMM Match : DUF1315 (HMM E-Value=2.7)                   29   4.0  

>SB_14250| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 226

 Score = 74.5 bits (175), Expect = 1e-13
 Identities = 38/86 (44%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 117 VGVQYAKYICMEYNKTIIPVHHMEAHALVARIYHNLP-FPFIVLLISGGHCLLCLVQDVN 175
           VG    + + M +    I VHHME H L   +  N P FPF+ LL+SGGH  L  V  + 
Sbjct: 2   VGASTGQALAMAWGVPAIGVHHMEGHLLAPMLEDNPPAFPFVALLVSGGHTQLVKVTAIG 61

Query: 176 QFLLLGESLDNAPGEILDKVARRMKL 201
            + LLGESLD+A GE  DK A+ + L
Sbjct: 62  AYELLGESLDDAAGEAFDKAAKMLGL 87


>SB_14165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1837

 Score = 66.1 bits (154), Expect = 4e-11
 Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 4/135 (2%)

Query: 78  HREHIETAVTEALSTAKIKIKDIDAVAVTVKPGLLLSLQVGVQYAKYICMEYNKTIIPVH 137
           H+EH    +  AL  A+I+ +DID +  T  PG+   L      A+ +   + K II V+
Sbjct: 9   HQEHAIDILRRALDEAQIRPQDIDCICYTKGPGMGAPLVAVAVVARTVAQLWKKLIIGVN 68

Query: 138 HMEAHALVARIYHNLPFPFIVLLISGGHC-LLCLVQDVNQFLLLGESLDNAPGEILDKVA 196
           H   H  + R+      P  VL +SGG+  ++  +Q   ++ + GE++D A G  LD+ A
Sbjct: 69  HCIGHIEMGRLITGANNP-TVLYVSGGNTQVIAYLQ--KRYRIFGETIDIAVGNCLDRFA 125

Query: 197 RRMKLKNIKDAGLTV 211
           R +KL N    G  +
Sbjct: 126 RVLKLSNDPSPGYNI 140


>SB_19608| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 426

 Score = 32.3 bits (70), Expect = 0.57
 Identities = 16/60 (26%), Positives = 31/60 (51%)

Query: 272 VAKYIDTERLITEVRLREPLWDKGHVLYKDHDAKLKAWQEVYADNSSKLDRHSEIIKKNL 331
           +  Y++ ERL+ E  +   L ++  VL  + ++ +  W+E Y   SS   +H  + K N+
Sbjct: 177 IKDYLEKERLMDEELVHTELCNEMKVLKGEIESVMCCWEEGYHRLSSVSGKHDSVSKNNI 236


>SB_2648| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 32.3 bits (70), Expect = 0.57
 Identities = 16/60 (26%), Positives = 31/60 (51%)

Query: 272 VAKYIDTERLITEVRLREPLWDKGHVLYKDHDAKLKAWQEVYADNSSKLDRHSEIIKKNL 331
           +  Y++ ERL+ E  +   L ++  VL  + ++ +  W+E Y   SS   +H  + K N+
Sbjct: 50  IKDYLEKERLMDEELVHTELCNEMKVLKGEIESVMCCWEEGYHRLSSVSGKHDSVSKNNI 109


>SB_13855| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 5/77 (6%)

Query: 64  VRYGGVNPFIAHELHREHIETAVTEALSTAKIKIKDIDAVAVTVKPGLLLSLQVGVQYAK 123
           V+ GG N F   EL  ++  + +T  +++A  K+ D++    T+K    L+   G    +
Sbjct: 54  VKSGGSNTF--GELAVKYF-SVITGPMNSACCKMGDVNQSGRTIKKSCNLNFTRGPD--Q 108

Query: 124 YICMEYNKTIIPVHHME 140
           + C  Y+KT+  VHH +
Sbjct: 109 WTCYPYSKTMGQVHHKQ 125


>SB_20744| Best HMM Match : CH (HMM E-Value=0.92)
          Length = 1103

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 212 RTRILLRTAYEDRRSSASACVPSVDRRAMETNERVL 247
           R R   RT   DR+ SASA  P V RR M+ +E +L
Sbjct: 839 RGRTTKRTPVRDRKRSASAS-PVVGRRRMDESEAIL 873


>SB_14335| Best HMM Match : DUF1315 (HMM E-Value=2.7)
          Length = 1223

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 1/95 (1%)

Query: 215  ILLRTAYEDRRSSASACVPSVDRRAMETNERVLCCTDEWTDRTDVCIIIKKSDFVLNVAK 274
            ++ +T Y +           +      T E+VL    +W       +I K     LN+ K
Sbjct: 1121 LVFKTTYFNSTPQTIINSTEIGEALRNTYEQVLNRIAQWVSEGSGWVIEKIDGQYLNIVK 1180

Query: 275  YIDTERLITEVRLREPLWDKGHVLYKDHDAKLKAW 309
            Y  T R  + ++L   L D+G V  K+ D +   W
Sbjct: 1181 YQPT-RGSSYIQLSVGLRDRGLVNMKNEDNECLRW 1214


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.137    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,169,768
Number of Sequences: 59808
Number of extensions: 455722
Number of successful extensions: 983
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 977
Number of HSP's gapped (non-prelim): 7
length of query: 334
length of database: 16,821,457
effective HSP length: 82
effective length of query: 252
effective length of database: 11,917,201
effective search space: 3003134652
effective search space used: 3003134652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)