GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000287-TA|BGIBMGA000287-PA|IPR009180|Peptidase M22,
O-sialoglycoprotein endopeptidase, IPR000905|Peptidase M22,
glycoprotease
         (334 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45270.1 68415.m05635 glycoprotease M22 family protein simila...   166   2e-41
At4g22720.2 68417.m03278 glycoprotease M22 family protein simila...    77   1e-14
At4g22720.1 68417.m03277 glycoprotease M22 family protein simila...    77   1e-14
At2g38600.1 68415.m04741 acid phosphatase class B family protein...    34   0.15 
At1g22260.1 68414.m02782 expressed protein                             33   0.27 
At1g22275.1 68414.m02784 expressed protein                             33   0.36 
At3g24340.1 68416.m03056 SNF2 domain-containing protein / helica...    31   1.4  
At5g59130.1 68418.m07411 subtilase family protein contains simil...    30   1.9  
At1g09930.1 68414.m01117 oligopeptide transporter OPT family pro...    30   2.5  
At5g24740.1 68418.m02920 expressed protein                             29   3.3  
At2g17210.1 68415.m01987 pentatricopeptide (PPR) repeat-containi...    29   5.8  
At1g22730.1 68414.m02840 MA3 domain-containing protein contains ...    29   5.8  

>At2g45270.1 68415.m05635 glycoprotease M22 family protein similar
           to SP|P36175 O-sialoglycoprotein endopeptidase (EC
           3.4.24.57) (Glycoprotease) {Pasteurella haemolytica};
           contains Pfam profile PF00814: Glycoprotease family
          Length = 480

 Score =  166 bits (404), Expect = 2e-41
 Identities = 87/187 (46%), Positives = 118/187 (63%), Gaps = 1/187 (0%)

Query: 26  NDFTILGIETSCDDTGCAVIDGAGNVLGESLYSQNAIHVRYGGVNPFIAHELHREHIETA 85
           ++  +LGIETSCDDT  AV+ G G +L + + SQ  + V+YGGV P  A E H   I+  
Sbjct: 82  DNLVVLGIETSCDDTAAAVVRGNGEILSQVISSQAELLVQYGGVAPKQAEEAHSRVIDKV 141

Query: 86  VTEALSTAKIKIKDIDAVAVTVKPGLLLSLQVGVQYAKYICMEYNKTIIPVHHMEAHALV 145
           V +AL  A +  KD+ AVAVT+ PGL L L+VGV+ A+ +   ++  I+ VHHMEAHALV
Sbjct: 142 VQDALDKANLTEKDLSAVAVTIGPGLSLCLRVGVRKARRVAGNFSLPIVGVHHMEAHALV 201

Query: 146 AR-IYHNLPFPFIVLLISGGHCLLCLVQDVNQFLLLGESLDNAPGEILDKVARRMKLKNI 204
           AR +   L FPF+ LLISGGH LL L   + Q+  LG ++D+A GE  DK A+ + L   
Sbjct: 202 ARLVEQELSFPFMALLISGGHNLLVLAHKLGQYTQLGTTVDDAIGEAFDKTAKWLGLDMH 261

Query: 205 KDAGLTV 211
           +  G  V
Sbjct: 262 RSGGPAV 268


>At4g22720.2 68417.m03278 glycoprotease M22 family protein similar
           to sialylglycoprotease [Haemophilus ducreyi] GI:6942294;
           contains Pfam profile PF00814: Glycoprotease family
          Length = 353

 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 49/181 (27%), Positives = 87/181 (48%), Gaps = 4/181 (2%)

Query: 31  LGIETSCDDTGCAVIDGAGNVLGESLYSQNAIHVRYGGVNPFIAHELHREHIETAVTEAL 90
           +G E S +  G  ++   G +L    ++       +G +    AH  H +H+   V  AL
Sbjct: 8   IGFEGSANKIGVGIVTLDGTILANPRHTY-ITPPGHGFLPRETAHH-HLDHVLPLVKSAL 65

Query: 91  STAKIKIKDIDAVAVTVKPGLLLSLQVGVQYAKYICMEYNKTIIPVHHMEAHALVARIYH 150
            T+++  ++ID +  T  PG+   LQV     + +   + K I+ V+H  AH  + R+  
Sbjct: 66  ETSQVTPEEIDCICYTKGPGMGAPLQVSAIVVRVLSQLWKKPIVAVNHCVAHIEMGRVVT 125

Query: 151 NLPFPFIVLLISGGHCLLCLVQDVNQFLLLGESLDNAPGEILDKVARRMKLKNIKDAGLT 210
               P +VL +SGG+  + +     ++ + GE++D A G  LD+ AR +KL N    G  
Sbjct: 126 GADDP-VVLYVSGGNTQV-IAYSEGRYRIFGETIDIAVGNCLDRFARVLKLSNDPSPGYN 183

Query: 211 V 211
           +
Sbjct: 184 I 184


>At4g22720.1 68417.m03277 glycoprotease M22 family protein similar
           to sialylglycoprotease [Haemophilus ducreyi] GI:6942294;
           contains Pfam profile PF00814: Glycoprotease family
          Length = 353

 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 49/181 (27%), Positives = 87/181 (48%), Gaps = 4/181 (2%)

Query: 31  LGIETSCDDTGCAVIDGAGNVLGESLYSQNAIHVRYGGVNPFIAHELHREHIETAVTEAL 90
           +G E S +  G  ++   G +L    ++       +G +    AH  H +H+   V  AL
Sbjct: 8   IGFEGSANKIGVGIVTLDGTILANPRHTY-ITPPGHGFLPRETAHH-HLDHVLPLVKSAL 65

Query: 91  STAKIKIKDIDAVAVTVKPGLLLSLQVGVQYAKYICMEYNKTIIPVHHMEAHALVARIYH 150
            T+++  ++ID +  T  PG+   LQV     + +   + K I+ V+H  AH  + R+  
Sbjct: 66  ETSQVTPEEIDCICYTKGPGMGAPLQVSAIVVRVLSQLWKKPIVAVNHCVAHIEMGRVVT 125

Query: 151 NLPFPFIVLLISGGHCLLCLVQDVNQFLLLGESLDNAPGEILDKVARRMKLKNIKDAGLT 210
               P +VL +SGG+  + +     ++ + GE++D A G  LD+ AR +KL N    G  
Sbjct: 126 GADDP-VVLYVSGGNTQV-IAYSEGRYRIFGETIDIAVGNCLDRFARVLKLSNDPSPGYN 183

Query: 211 V 211
           +
Sbjct: 184 I 184


>At2g38600.1 68415.m04741 acid phosphatase class B family protein
           similar to acid phosphatase [Glycine max] GI:3341443;
           contains Pfam profile PF03767: HAD superfamily
           (subfamily IIIB) phosphatase
          Length = 251

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 193 DKVARRMKLKNIKDAGLTVRTRILLRTAYEDRRSSASACVPSVDRRAMETNERVL-CCTD 251
           ++  R+  L+N+ + G T   R+++RTA +++R SA+     + +  ME   R+     D
Sbjct: 168 EETLRQATLENLHNQGFTGYERLIMRTA-DNKRQSATTYKTRIRKEMMEEGYRIWGNVGD 226

Query: 252 EWTD 255
           +W+D
Sbjct: 227 QWSD 230


>At1g22260.1 68414.m02782 expressed protein
          Length = 857

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 17/60 (28%), Positives = 32/60 (53%)

Query: 270 LNVAKYIDTERLITEVRLREPLWDKGHVLYKDHDAKLKAWQEVYADNSSKLDRHSEIIKK 329
           LN+    D E   ++++    L ++   L  +HDA+LKA++  Y D+  KL    ++ +K
Sbjct: 634 LNLKAKYDQELRQSQIQAENELKERITALKSEHDAQLKAFKCQYEDDCKKLQEELDLQRK 693


>At1g22275.1 68414.m02784 expressed protein
          Length = 856

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 17/60 (28%), Positives = 31/60 (51%)

Query: 270 LNVAKYIDTERLITEVRLREPLWDKGHVLYKDHDAKLKAWQEVYADNSSKLDRHSEIIKK 329
           LN+    D E    +++    L ++   L  +HDA+LKA++  Y D+  KL    ++ +K
Sbjct: 634 LNLKAKYDQELRQNQIQAENELKERITALKSEHDAQLKAFKCQYEDDCKKLQEELDLQRK 693


>At3g24340.1 68416.m03056 SNF2 domain-containing protein / helicase
            domain-containing protein similar to SP|P41410 DNA repair
            protein rhp54 (RAD54 homolog) {Schizosaccharomyces
            pombe}; contains PFam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain
          Length = 1132

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 18/59 (30%), Positives = 31/59 (52%)

Query: 269  VLNVAKYIDTERLITEVRLREPLWDKGHVLYKDHDAKLKAWQEVYADNSSKLDRHSEII 327
            VL  ++YIDT +LI E  + E  W +G  +   H    +  ++   DN +K D  S+++
Sbjct: 946  VLVYSQYIDTLKLIMEQLIAECDWTEGEQILLMHGKVEQRDRQHMIDNFNKPDSGSKVL 1004


>At5g59130.1 68418.m07411 subtilase family protein contains
           similarity to prepro-cucumisin GI:807698 from [Cucumis
           melo]
          Length = 732

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 100 IDAVAVTVKPGLLLSLQVGVQYAKYIC-MEYNKTIIPVHHMEAHALVARIY-HNLPFPFI 157
           +D +A T  PGL+  +     Y  ++C M YNKT + +   EA     +I   NL +P +
Sbjct: 569 VDPIAAT-NPGLVYEI-TKTDYFAFLCGMNYNKTTVKLISGEAVTCSEKISPRNLNYPSM 626

Query: 158 VLLISGGH 165
              +SG +
Sbjct: 627 SAKLSGSN 634


>At1g09930.1 68414.m01117 oligopeptide transporter OPT family
           protein similar to SP|P40900 Sexual differentiation
           process protein isp4 {Schizosaccharomyces pombe};
           contains Pfam profile PF03169: OPT oligopeptide
           transporter protein
          Length = 734

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 10/26 (38%), Positives = 18/26 (69%)

Query: 309 WQEVYADNSSKLDRHSEIIKKNLNVP 334
           WQ+V A   +K+D H+ ++KK  ++P
Sbjct: 387 WQQVRASTKAKMDIHTRLMKKYKDIP 412


>At5g24740.1 68418.m02920 expressed protein
          Length = 3306

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 274  KYIDTER-LITEVRLREPLWDKGHVLYKDH--DAKLKAWQEV 312
            ++ DT R L+  +RL EP W        DH  D +LK W  V
Sbjct: 2416 QWTDTTRELLVSIRLNEPGWQWSGSFLPDHLGDTQLKIWNYV 2457


>At2g17210.1 68415.m01987 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 715

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)

Query: 274 KYIDTERLITEVRLREPLWDKGHVLYKDHDAKLKAWQEV 312
           K I T  ++ EV   EPL   G++L     A  K+W++V
Sbjct: 613 KLIITSEVVAEVLELEPLCSSGYLLASSTFAAEKSWEDV 651


>At1g22730.1 68414.m02840 MA3 domain-containing protein contains
           Pfam profile PF02847: MA3 domain; low similarity to
           programmed cell death 4 protein [Gallus gallus]
           GI:12958564
          Length = 693

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/48 (27%), Positives = 28/48 (58%)

Query: 78  HREHIETAVTEALSTAKIKIKDIDAVAVTVKPGLLLSLQVGVQYAKYI 125
           H E ++ A+  A+   K +++ +D +  T++ GL+ S QV   +++ I
Sbjct: 288 HHEIVKRALIMAMERRKAQVRLLDLLKETIEVGLINSTQVTKGFSRII 335


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.137    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,778,995
Number of Sequences: 28952
Number of extensions: 319378
Number of successful extensions: 719
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 706
Number of HSP's gapped (non-prelim): 13
length of query: 334
length of database: 12,070,560
effective HSP length: 81
effective length of query: 253
effective length of database: 9,725,448
effective search space: 2460538344
effective search space used: 2460538344
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)