Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000286-TA|BGIBMGA000286-PA|IPR010849|DiGeorge syndrome
critical 6
(177 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 28 0.69
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 28 0.69
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch... 27 1.6
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 27 1.6
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 1.6
SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.1
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 27 2.1
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 26 3.7
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S... 26 3.7
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 25 4.8
SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|... 25 6.4
SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.5
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 25 8.5
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 28.3 bits (60), Expect = 0.69
Identities = 17/74 (22%), Positives = 35/74 (47%)
Query: 73 FQQRLQVINKHTLEIQKMINNTTDPQQQDLQKALLLSRHKEEMKQTDMKLIMQLDQKVSD 132
F++ + ++ EI+KM + D +++ K + +E+K +MK +++L Q D
Sbjct: 21 FEELQREADEAAAEIEKMQKTSLDERKELSSKTKEFRKQPDEVKLGEMKGLLKLYQSGID 80
Query: 133 QQVTLEKAGVPGFF 146
K+ FF
Sbjct: 81 SLTKRAKSAEATFF 94
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 28.3 bits (60), Expect = 0.69
Identities = 14/54 (25%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 69 EKHLFQQRLQVINKHTLEIQKMINNTTDPQQQDLQKALLLSRHKEEMKQTDMKL 122
+KH+F+Q +++ L+I + + Q+ QKA+++S++KE ++ ++ L
Sbjct: 518 DKHVFEQENMLLSSSKLQILAALLKSF---QRGCQKAVIVSQYKETLELIELFL 568
>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 530
Score = 27.1 bits (57), Expect = 1.6
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 8 PEALQR---KLYFLLEQLQDMARELPPKYQMRVPIELL 42
PE++Q ++Y+ LE L D + K R+PIEL+
Sbjct: 206 PESIQTDMGRVYYFLETLVDRSSTFSGKSTGRIPIELI 243
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 27.1 bits (57), Expect = 1.6
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 75 QRLQVINKHTLEIQKMINNTTDPQQQDLQKALLLSRHKEEMKQTDMKLIMQLDQKVSDQQ 134
QR+ +K E N + + +LQKA+ LS+ ++E +Q + Q +Q Q
Sbjct: 236 QRVIEESKRQAEEDAKRRNMANDSEAELQKAIQLSKEEDEARQRHQREREQQEQAFMGNQ 295
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.1 bits (57), Expect = 1.6
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 75 QRLQVINKHTLEIQKMINNTTDPQQQDLQKALLLSRHKEEMKQTDMKLIMQLDQKVSDQQ 134
Q++ V+ +++ E + N Q DL++ + RH++E+ +L + LD + +QQ
Sbjct: 1172 QQITVLQQNSSENLNISANLEAVQDNDLRELVSYLRHEKEIMDNKYELTI-LDNRGLNQQ 1230
Query: 135 V 135
V
Sbjct: 1231 V 1231
>SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 203
Score = 26.6 bits (56), Expect = 2.1
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 80 INKHTLEIQKMINNTTDPQQQDLQKALLLS---RHKEEMKQTDMKLIMQLDQKVSDQQVT 136
I + EI+++ N+ + Q LQ A+ + R KEE KQT+ +L+ ++ + +
Sbjct: 96 IEGYIKEIERLSNSNKNLQAAVLQMAVSDTDDPRLKEEYKQTEKELLREISGNHKSKILK 155
Query: 137 LEK 139
LE+
Sbjct: 156 LEE 158
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 26.6 bits (56), Expect = 2.1
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 11/110 (10%)
Query: 6 PTPEALQRKLYFLLEQLQDMARELPPKYQMRVPI--ELL----SGLANCLLNDTIFEIVK 59
PTP++ R E QD+ PP+ + P +L GL++C D+ V
Sbjct: 340 PTPQSAPRAQSASTETAQDLDFLTPPRLSVNNPFLSDLYPASEQGLSSCEEKDS---PVD 396
Query: 60 GLMEIQHVTEKHLFQQRLQ--VINKHTLEIQKMINNTTDPQQQDLQKALL 107
G H E+ + +++ Q I+ T E Q+ I ++L K++L
Sbjct: 397 GDEFFNHTNEEEIIEKQFQSTSISAMTSEKQEQILRECPDIDEELGKSIL 446
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.8 bits (54), Expect = 3.7
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 45 LANCLLNDTIFEIVKGLMEIQHVTEKHLFQ-QRLQVINKHTLEIQKMINNTTDPQQQDLQ 103
LAN TIFE + + IQ K LF+ RL++ + K ++NTT+ +
Sbjct: 1103 LANSYETSTIFEPLLRKLHIQSANIKQLFRIYRLEIFWSF---VSKDLSNTTNDFLEFPY 1159
Query: 104 KALLLSRHKEEMKQTDMKLIMQLDQKVSDQQVTLEK 139
K + S + +K+ ++I+ L + + +TL K
Sbjct: 1160 KPIYFSL-SDFLKENSDEIILVL---ILTKNITLAK 1191
>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
Vps33|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 25.8 bits (54), Expect = 3.7
Identities = 12/53 (22%), Positives = 25/53 (47%)
Query: 19 LEQLQDMARELPPKYQMRVPIELLSGLANCLLNDTIFEIVKGLMEIQHVTEKH 71
+ Q++D +L + + +GLA L+ T + L+++QH+ H
Sbjct: 314 VNQIRDFVSKLGSLQSEHTSLNIHTGLAETLVQHTKNNYFQKLLQLQHLLVSH 366
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 25.4 bits (53), Expect = 4.8
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 37 VPIELLSGLANCLLNDTIFEIVKGLMEIQHVTEKHL 72
+ +++LSGL N +F+++ L+E + HL
Sbjct: 363 ITLQILSGLTGIRFNKPLFKLLGSLVEHRSSVPNHL 398
>SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit
L23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 161
Score = 25.0 bits (52), Expect = 6.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 108 LSRHKEEMKQTDMKLIMQLDQKVSDQQV 135
LSR+ + ++Q DMK + + K+ D+Q+
Sbjct: 119 LSRYPKVLEQVDMKRVNEELSKLQDKQI 146
>SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 261
Score = 24.6 bits (51), Expect = 8.5
Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 12/110 (10%)
Query: 77 LQVINKHTLEIQKMINNTTDPQQQDLQKALLLSRHKEEMKQTDMKLIMQLDQKVSDQQVT 136
L V+NK T + + + T+ Q ++L+K +E++ + I L K + +
Sbjct: 11 LPVMNKQTSLVLQNLKEETENQLKELEKKRSQLHKEEQINLQLVYAINDLRSKTKELKAE 70
Query: 137 LEKA-------GVPGFFVTNKPIEI-----KVQMYLLDFILRLSKMDVPH 174
EK G NK I++ K++ LL + ++ +M+ H
Sbjct: 71 NEKEDTFLNSFNASGDLTANKKIQLREQSRKLEESLLSYHKKVKEMEKQH 120
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 24.6 bits (51), Expect = 8.5
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 98 QQQDLQKALLLSRHKEEMKQTDMKLIMQLDQKVSDQQV 135
QQQ Q LL ++ +K++D + + +KVS ++
Sbjct: 78 QQQLAQSGLLNKEEQQSLKRSDTSVFPKAVRKVSSSKI 115
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.321 0.136 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 761,054
Number of Sequences: 5004
Number of extensions: 28435
Number of successful extensions: 111
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 104
Number of HSP's gapped (non-prelim): 13
length of query: 177
length of database: 2,362,478
effective HSP length: 68
effective length of query: 109
effective length of database: 2,022,206
effective search space: 220420454
effective search space used: 220420454
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)
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