Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000286-TA|BGIBMGA000286-PA|IPR010849|DiGeorge syndrome
critical 6
         (177 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   0.97 
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    23   1.7  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    23   1.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   2.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.0  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.8 bits (49), Expect = 0.97
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)

Query: 98  QQQDLQKALLLSRHK--EEMKQTDMKLIMQLDQKVSDQ 133
           Q+Q   K L  S  K  EEMK+TD  L   + ++V+D+
Sbjct: 369 QEQLKSKKLEESMRKLDEEMKRTDELLYQMIPKQVADR 406


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
          protein.
          Length = 300

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 41 LLSGLANCLLNDTI--FEIVKGLMEIQHVTEKHLFQQR 76
          L  G+A  +   T+   E VK L+++QH++++   +QR
Sbjct: 15 LAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQR 52


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
          protein.
          Length = 300

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 41 LLSGLANCLLNDTI--FEIVKGLMEIQHVTEKHLFQQR 76
          L  G+A  +   T+   E VK L+++QH++++   +QR
Sbjct: 15 LAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQR 52


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)

Query: 27  RELPPKYQMRVPIELLSGLA 46
           R LP    MRVP +LL+ LA
Sbjct: 342 RRLPKLLLMRVPDDLLNDLA 361


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 12/51 (23%), Positives = 23/51 (45%)

Query: 67  VTEKHLFQQRLQVINKHTLEIQKMINNTTDPQQQDLQKALLLSRHKEEMKQ 117
           +TE+    Q  Q   +   + Q +IN     QQQ  Q+     + +++ +Q
Sbjct: 411 MTEQQQQMQAQQQHQQQQQQTQHVINAQQPQQQQQQQQQQQQQQQQQQQQQ 461


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.136    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,103
Number of Sequences: 429
Number of extensions: 1775
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 177
length of database: 140,377
effective HSP length: 54
effective length of query: 123
effective length of database: 117,211
effective search space: 14416953
effective search space used: 14416953
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 41 (20.6 bits)