Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000286-TA|BGIBMGA000286-PA|IPR010849|DiGeorge syndrome
critical 6
(177 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1298 + 29141578-29141623,29142129-29142250,29143818-291438... 34 0.075
04_04_0076 + 22558105-22558261,22558356-22558405,22559837-225600... 33 0.099
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324... 33 0.17
09_01_0041 + 746494-746691,747301-747495,750509-750631,751457-75... 31 0.69
01_06_0747 - 31645136-31646521,31647870-31648142,31649080-316491... 29 1.6
06_01_0201 - 1546455-1546652,1547124-1547201,1548217-1548402,154... 29 2.1
01_06_1409 - 37111954-37112061,37112295-37112330,37112434-371124... 29 2.8
01_01_0542 + 3975500-3975546,3976273-3976370,3976694-3976830,397... 29 2.8
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373... 28 3.7
07_03_0358 - 17177253-17177369,17177635-17177931,17178961-171790... 28 3.7
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287... 28 4.9
01_06_1713 - 39359558-39359590,39360000-39360074,39360437-393606... 28 4.9
11_06_0291 + 22008412-22012284 27 6.5
04_03_0981 - 21411073-21411318,21411692-21411802,21413236-21413352 27 6.5
07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726... 27 8.6
03_05_0432 - 24231984-24233048,24233391-24235160,24235261-242365... 27 8.6
02_01_0787 - 5907355-5907457,5908328-5908461,5908542-5908628,590... 27 8.6
>06_03_1298 +
29141578-29141623,29142129-29142250,29143818-29143874,
29143983-29144138,29144220-29144304,29144575-29144665,
29144807-29144971,29145064-29145186,29145334-29145409,
29145513-29145642,29145951-29147824,29148339-29148529,
29148697-29148860,29149164-29149275,29149276-29149294
Length = 1136
Score = 33.9 bits (74), Expect = 0.075
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 74 QQRLQVINKHTLEIQKMINNTTDPQQQDLQK--ALLLSRHKEEMKQTDMKLIMQLDQKVS 131
QQ+ Q + +Q+ QQQ L K A L S ++ + TD +L +QL QK+
Sbjct: 551 QQQQQQQQQQQKLLQQQQQQLLLQQQQQLSKMPAQLSSLANQQFQLTDQQLQLQLLQKLQ 610
Query: 132 DQQVTLEKAGVPGFFVTNKPIEIKVQMYLLDFILRLS 168
QQ +L P + P+ + Q LLD +LS
Sbjct: 611 QQQQSL--LSQPAVTLAQLPLIQEQQKLLLDMQQQLS 645
>04_04_0076 +
22558105-22558261,22558356-22558405,22559837-22560044,
22560112-22560237,22560469-22560567,22560729-22561405,
22561483-22561731,22561808-22561936,22562021-22562089,
22562183-22562256,22563086-22563098,22563361-22563468,
22563541-22563651,22563725-22563811,22564043-22564068,
22564840-22564906,22565123-22565212,22565295-22565387,
22565515-22565604,22565699-22565761,22566349-22566447
Length = 894
Score = 33.5 bits (73), Expect = 0.099
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 12/113 (10%)
Query: 61 LMEIQHVTEKHLFQQRLQVINK-HTLEIQKMINNTTDPQQQDLQKALLLSRHKEEMKQTD 119
L IQ E L ++RL + K H +++ K + + Q LQ L L + KEE ++
Sbjct: 640 LQRIQSQAENEL-RERLSSLRKDHEIQM-KSLTKKHEENCQKLQDELELQKSKEEKQRAL 697
Query: 120 MKL---IMQLDQKVSDQQVTLEKAGVPGFFVTNKPIEIKVQMYLLDFILRLSK 169
++L +M Q+V DQ+V +K GFF I +LLDF L K
Sbjct: 698 LQLQWKVMGETQQV-DQEVNSKKVKTIGFFSRCSYIS-----FLLDFPKELLK 744
>03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,
3242494-3242836,3244138-3248540,3248928-3249107,
3249108-3250892,3251055-3252173
Length = 2727
Score = 32.7 bits (71), Expect = 0.17
Identities = 23/86 (26%), Positives = 47/86 (54%), Gaps = 8/86 (9%)
Query: 62 MEIQHVTEKHLFQQRLQVINKHTLEIQK---MINNTTDPQQQDLQKALLLSRHKE----E 114
+E ++ +L+ Q + +N+ TLEI++ M+N+ + + LLL+ K+ +
Sbjct: 1176 VETALISSGNLYSQSQEDVNRLTLEIERLNEMLNDMENKSSEYKSTILLLNSEKDMSVIQ 1235
Query: 115 MKQTDMKLIMQLDQKVSDQQVTLEKA 140
KQ+ ++ I +L+ K+S Q L+ A
Sbjct: 1236 YKQSSLR-IYELESKLSGVQEELDNA 1260
>09_01_0041 +
746494-746691,747301-747495,750509-750631,751457-751636,
752772-753058,754343-754907
Length = 515
Score = 30.7 bits (66), Expect = 0.69
Identities = 19/73 (26%), Positives = 33/73 (45%)
Query: 68 TEKHLFQQRLQVINKHTLEIQKMINNTTDPQQQDLQKALLLSRHKEEMKQTDMKLIMQLD 127
T H QR + + +K I+N Q+ + LL + +EM+ ++ L QLD
Sbjct: 127 TISHKALQREITLQEENAAYEKAISNCRQKIQEKQMEVTLLRSNLKEMEISEQDLKAQLD 186
Query: 128 QKVSDQQVTLEKA 140
++Q + KA
Sbjct: 187 NAQNEQYASQNKA 199
>01_06_0747 -
31645136-31646521,31647870-31648142,31649080-31649148,
31649486-31649614
Length = 618
Score = 29.5 bits (63), Expect = 1.6
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 10/108 (9%)
Query: 42 LSGLANCL--LNDTIFEIVKGLMEIQHVTEKHLFQQRLQVINKHTLEIQKMINNTTDPQQ 99
L G+ N L L +++ + + E++ + QRL+ + KH E+ + I D Q+
Sbjct: 111 LEGITNRLSQLEIYCYKLERSMGELRSDVLRDETDQRLKSLEKHLHEVHRSIQILRDKQE 170
Query: 100 -QDLQKALLLSR--HKEEMKQTDMKLIMQLDQKVSDQQVTLEKAGVPG 144
+ QK L + H K+ DM +QK + EKA PG
Sbjct: 171 LAETQKELAKFQLTHDTSKKKEDMPTPSFPEQKTLE-----EKADAPG 213
>06_01_0201 -
1546455-1546652,1547124-1547201,1548217-1548402,
1548909-1548919,1549256-1549568
Length = 261
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 106 LLLSRHKEEMKQTDMKLIMQLDQKVSDQQVTLEKA-GVPGFFVTNKPIEIKVQMYL 160
LLL RH + + + L+ L Q D VTL+ GV +T+ P + ++ + L
Sbjct: 91 LLLFRHSQSIPDLQVLLVNSLHQPKEDPVVTLDHIFGVEPMKITSPPTDNEIALAL 146
>01_06_1409 -
37111954-37112061,37112295-37112330,37112434-37112498,
37112610-37112688,37112967-37113041,37113623-37114147
Length = 295
Score = 28.7 bits (61), Expect = 2.8
Identities = 17/76 (22%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 61 LMEIQHVTEKHLFQQRLQVINKHTLEIQKMINNTTDPQQQDLQKALLLSRHKEE--MKQT 118
L + QH+ ++ QQ+ Q + + + Q+ + QQQ LQ+ +++ + +Q+
Sbjct: 46 LPQHQHLQQQQQQQQQQQKLQQQQQQQQQKLQQQQQQQQQKLQQQQQQQQNQPQHSSQQS 105
Query: 119 DMKLIMQLDQKVSDQQ 134
++ Q++S QQ
Sbjct: 106 QQTTTLRNQQQISQQQ 121
>01_01_0542 +
3975500-3975546,3976273-3976370,3976694-3976830,
3977518-3977871,3977953-3978041,3978502-3978589,
3978659-3978734,3978858-3978907,3979032-3979340,
3979803-3979982,3980086-3980325,3980471-3980582,
3980931-3981040,3981162-3981311,3981777-3981932,
3982289-3982405,3982759-3982839,3983338-3983478
Length = 844
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/77 (20%), Positives = 35/77 (45%)
Query: 67 VTEKHLFQQRLQVINKHTLEIQKMINNTTDPQQQDLQKALLLSRHKEEMKQTDMKLIMQL 126
V ++ Q ++ + ++Q+ ++ QQ + LLL RH ++ +Q + Q
Sbjct: 88 VAASYIETQSIKAREQQPSQLQQQEAHSQQSSQQIQMQQLLLQRHAQQQQQQQSQQQPQQ 147
Query: 127 DQKVSDQQVTLEKAGVP 143
++ QQ E + +P
Sbjct: 148 QRRQQKQQQRSESSHLP 164
>12_02_0953 - 24736642-24736673,24737104-24737188,24737267-24737386,
24737484-24737549,24737629-24737799,24737901-24737999,
24738075-24738186,24738282-24738343,24738412-24738483,
24738583-24738681,24738764-24738997,24739104-24739178,
24739299-24739386,24739478-24739638,24739734-24739841,
24739934-24741922,24742007-24742279,24742957-24743295,
24743449-24745038,24745166-24745241,24745333-24745412,
24745614-24745679,24745761-24745830,24745899-24746134,
24746149-24746319,24746915-24747097,24747176-24747241,
24747326-24747389,24747472-24747530,24747612-24747699,
24747799-24747891,24747956-24748116,24748215-24748307,
24748405-24748518,24748654-24748773,24748852-24748935,
24749016-24749171,24749518-24750154,24752874-24752929
Length = 2815
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 98 QQQDLQKALLLSRHKEEMKQTD--MKLIMQLDQKVSDQQVTLEK 139
QQ D Q++ + H E +Q+D MKL QLD+ + ++Q L++
Sbjct: 2550 QQMDTQESAVTQAH-ESKEQSDELMKLRSQLDELIEERQSWLDE 2592
>07_03_0358 -
17177253-17177369,17177635-17177931,17178961-17179032,
17179117-17179383,17179752-17179910,17180194-17180295,
17180696-17180767,17181105-17181200,17181710-17181871,
17181941-17182021,17182837-17183094,17183173-17183275,
17183412-17183542,17184827-17184919,17184999-17185099,
17186271-17186355,17186487-17186701,17186779-17186842,
17187128-17187214,17188922-17189022,17190206-17190397,
17190533-17190599,17191211-17191351
Length = 1020
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 9 EALQRKLYFLLEQLQDMARELPPKYQMRVPIELLSGL 45
E LY +L + AR L K ++PIELL+G+
Sbjct: 413 EVYSVSLYQILPWISSQARNLLKKAGEKIPIELLNGI 449
>08_01_0321 +
2872609-2873027,2873477-2873905,2874743-2874944,
2875909-2875947,2876309-2876354,2877380-2877922,
2878827-2880847,2880972-2881215,2881642-2881684,
2881923-2881962,2883580-2883675,2883712-2883759,
2883964-2884290
Length = 1498
Score = 27.9 bits (59), Expect = 4.9
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 52 DTIFEIVKGLMEI-----QHVTEKHLFQQRLQVINKHTLEIQKMINNTTDPQQQDLQKAL 106
D I E+ K L+EI ++ + + R I+ H L I+KM NN + +
Sbjct: 122 DAIQEMEKKLLEIDARHGRYPVDNIVIPARPTPIDPHILNIEKMANNLVGIDEPRDELIK 181
Query: 107 LLSRHKEE 114
+LS+H+ +
Sbjct: 182 MLSQHERD 189
>01_06_1713 -
39359558-39359590,39360000-39360074,39360437-39360662,
39360792-39360880,39360960-39361053,39361134-39361318,
39361415-39361582,39361682-39361822,39362327-39362545,
39362628-39362744,39363154-39363248,39363662-39363743,
39363864-39363926,39364157-39364216,39364312-39364476,
39364574-39364759,39364890-39365180,39365262-39365405,
39365492-39366172,39367045-39367362
Length = 1143
Score = 27.9 bits (59), Expect = 4.9
Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 10/131 (7%)
Query: 9 EALQRKLYFLLEQLQDMARELPPKYQMRVPIELLSGLANCLLNDTIFEIVKGLMEIQHVT 68
+AL+RK+ L +LQ M+++L R E L + + N+ ++E Q T
Sbjct: 786 KALERKIKSLKSELQSMSKQLKAHESER---ERLIMEKDAVANEL------AMLEEQLTT 836
Query: 69 EKHLFQQRLQVINKHTLEIQKMINNTTDPQQQDLQKALLLSRHKEEMKQTDMKLIMQLDQ 128
K + +N+H ++ I D + +L + + + K +L Q
Sbjct: 837 SKAQIAAMTETLNRHQTKVAS-IKQDYDQAESELNIGRSKLKECDSQINSMAKEQQKLQQ 895
Query: 129 KVSDQQVTLEK 139
++SD V +K
Sbjct: 896 QLSDSNVERKK 906
>11_06_0291 + 22008412-22012284
Length = 1290
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 71 HLFQQRLQVINKHTLEIQKMINNTTDPQQQDLQKALLLSRHKEEMKQTDMKLIMQLDQKV 130
H ++ ++ +N + +++K+ ++ D Q + K LLL K+ + Q D+ +++QL
Sbjct: 293 HKIKRNIEKMNVYK-KLEKIKSDIKDGQHKS-DKQLLLQLQKKGVDQVDLHVLVQLLLLQ 350
Query: 131 SDQQVTLEKA 140
S Q KA
Sbjct: 351 SQQDQANNKA 360
>04_03_0981 - 21411073-21411318,21411692-21411802,21413236-21413352
Length = 157
Score = 27.5 bits (58), Expect = 6.5
Identities = 16/74 (21%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 67 VTEKHLFQQRLQVINKHTLEIQKMINNTTDPQQQDLQKALLLSRHKEEMKQTDMKLIMQL 126
++E Q++Q +N+ E + I+ P ++ + + + KEE + +M +MQ
Sbjct: 56 LSEVRQMVQQMQALNQQLEEAETAIDEYFKPIDKNAKIIMDMQLEKEEKQIKEMTKVMQ- 114
Query: 127 DQKVSDQQVTLEKA 140
DQ +++ ++A
Sbjct: 115 DQIAMQREIASKRA 128
>07_01_0875 -
7265529-7265588,7265681-7265746,7266008-7266293,
7267138-7267142
Length = 138
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 28 ELPPKYQMRVPIELLSGLANCLLNDTIFE-IVKGLMEIQHVTEKHLFQ 74
E PP + P++L++ L + + + +VKGL E EKH Q
Sbjct: 8 EAPPAPVLGEPMDLMTALQLVMKKSSAHDGLVKGLREAAKAIEKHAAQ 55
>03_05_0432 -
24231984-24233048,24233391-24235160,24235261-24236582,
24236668-24237013
Length = 1500
Score = 27.1 bits (57), Expect = 8.6
Identities = 17/79 (21%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 70 KHLFQQRLQVINKHTLEIQKMINNTTDPQ---------QQDLQKALLLSRHKEEMKQTDM 120
KH+ +Q+ + +N+ E++K+ +T + Q L+K L+L++ K + +
Sbjct: 236 KHMLKQKHEELNEKQAELEKLNISTEEEHLKCMQAEMAQLSLEKQLILAQDKMRLLALEK 295
Query: 121 KLIMQLDQKVSDQQVTLEK 139
++ + + ++V LEK
Sbjct: 296 QIEVSKAKDTETEKVMLEK 314
>02_01_0787 -
5907355-5907457,5908328-5908461,5908542-5908628,
5908733-5908924,5909036-5909188
Length = 222
Score = 27.1 bits (57), Expect = 8.6
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 28 ELPPKYQMRVPIELLSGLANCLLNDTIFEIVKGLMEIQHVTEKHLFQQRLQV 79
E PP+ + + P + + N +LN + V+G EI V + Q RLQV
Sbjct: 96 EHPPRIKFKRPDKTARHIMN-ILNKEAVDKVRGEREIPDVQPGCIIQMRLQV 146
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.136 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,460,285
Number of Sequences: 37544
Number of extensions: 156808
Number of successful extensions: 443
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 434
Number of HSP's gapped (non-prelim): 21
length of query: 177
length of database: 14,793,348
effective HSP length: 77
effective length of query: 100
effective length of database: 11,902,460
effective search space: 1190246000
effective search space used: 1190246000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)
- SilkBase 1999-2023 -