Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000285-TA|BGIBMGA000285-PA|IPR000618|Insect cuticle
protein
         (460 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       27   0.28 
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    23   6.0  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    22   7.9  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    22   7.9  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    22   7.9  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    22   7.9  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    22   7.9  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           22   7.9  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    22   7.9  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 27.1 bits (57), Expect = 0.28
 Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 4/36 (11%)

Query: 411 KQQKEER--DGEVVKGQYSLVE-PDGSVRTVDYVAD 443
           K + EER  DG +V G+Y +V   DGS+R V Y AD
Sbjct: 204 KYRVEERTSDGFIV-GEYGVVSHDDGSLRGVRYTAD 238


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 302 SSAPAYSSASFTRHSSPAVAAYSRPAIAPVSTHYSTPVISHYSTPGVAQV-PEYLGARSN 360
           S++ A  S+  T   S + +   +PA +  S + S+P  S  ST    +       ++S+
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPPGKPATSTTSQNLSSPASSTSSTSSTEKAGTNNNNSKSS 192

Query: 361 YASTP 365
            +S P
Sbjct: 193 QSSNP 197


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 302 SSAPAYSSASFTRHSSPAVAAYSRPAIAPVSTHYSTPVISHYST 345
           S++ A  S+  T   S + +   +PA +  S + S+P  S  ST
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSST 176


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 302 SSAPAYSSASFTRHSSPAVAAYSRPAIAPVSTHYSTPVISHYST 345
           S++ A  S+  T   S + +   +PA +  S + S+P  S  ST
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSST 176


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 302 SSAPAYSSASFTRHSSPAVAAYSRPAIAPVSTHYSTPVISHYST 345
           S++ A  S+  T   S + +   +PA +  S + S+P  S  ST
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSST 176


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 302 SSAPAYSSASFTRHSSPAVAAYSRPAIAPVSTHYSTPVISHYST 345
           S++ A  S+  T   S + +   +PA +  S + S+P  S  ST
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSST 176


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 302 SSAPAYSSASFTRHSSPAVAAYSRPAIAPVSTHYSTPVISHYST 345
           S++ A  S+  T   S + +   +PA +  S + S+P  S  ST
Sbjct: 89  SNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSST 132


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 302 SSAPAYSSASFTRHSSPAVAAYSRPAIAPVSTHYSTPVISHYST 345
           S++ A  S+  T   S + +   +PA +  S + S+P  S  ST
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSST 176


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 302 SSAPAYSSASFTRHSSPAVAAYSRPAIAPVSTHYSTPVISHYST 345
           S++ A  S+  T   S + +   +PA +  S + S+P  S  ST
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSST 176


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.312    0.125    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,559
Number of Sequences: 317
Number of extensions: 4301
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 9
length of query: 460
length of database: 114,650
effective HSP length: 59
effective length of query: 401
effective length of database: 95,947
effective search space: 38474747
effective search space used: 38474747
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 45 (22.2 bits)