Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000285-TA|BGIBMGA000285-PA|IPR000618|Insect cuticle
protein
(460 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1) 42 8e-04
SB_27928| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.030
SB_40330| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.090
SB_59380| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.28
SB_57482| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 34 0.28
SB_1002| Best HMM Match : OTCace_N (HMM E-Value=0) 33 0.36
SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.36
SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29) 33 0.48
SB_57270| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.64
SB_44730| Best HMM Match : zf-C2H2 (HMM E-Value=0) 32 0.84
SB_44248| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_25257| Best HMM Match : Pkinase (HMM E-Value=4e-10) 31 1.5
SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17) 31 1.9
SB_39254| Best HMM Match : GRP (HMM E-Value=3.3) 31 1.9
SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34) 31 1.9
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.6
SB_2244| Best HMM Match : zf-CCCH (HMM E-Value=0.004) 31 2.6
SB_16224| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.6
SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37) 30 4.5
SB_20126| Best HMM Match : TSP_1 (HMM E-Value=0.0041) 30 4.5
SB_58319| Best HMM Match : Herpes_BFRF1 (HMM E-Value=3.6) 29 5.9
SB_48133| Best HMM Match : RYDR_ITPR (HMM E-Value=2) 29 5.9
SB_10204| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23) 29 5.9
SB_49341| Best HMM Match : Rad21_Rec8_N (HMM E-Value=2.3) 29 5.9
SB_42552| Best HMM Match : RhoGAP (HMM E-Value=0) 29 5.9
SB_7402| Best HMM Match : Extensin_2 (HMM E-Value=2) 29 5.9
SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046) 29 7.8
SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011) 29 7.8
SB_13864| Best HMM Match : FtsX (HMM E-Value=1.6) 29 7.8
>SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1)
Length = 231
Score = 42.3 bits (95), Expect = 8e-04
Identities = 47/188 (25%), Positives = 69/188 (36%), Gaps = 12/188 (6%)
Query: 193 PTVRYAASPALKAQQNAQVDSTQYSTGVQYNQVQNL-PALQIPPGIQYAAPSVSQVPVPR 251
PT Y +P+ + +T Y+ Y + P P Y P+ S P P
Sbjct: 22 PTTSYTPTPSY-TPTTSYTCTTSYTPTPSYTPTPSYTPTTSYTPTTSYT-PTTSYTPTP- 78
Query: 252 ITQYFTPTQYSSGASYIASTAAQYLPTVKHAGAALNQVVVPISNGYSKGLSSAPAYSSA- 310
Y T Y+ SY ++T+ Y PT + + P S + + P+Y+S
Sbjct: 79 --SYTPTTSYTPTPSYTSTTS--YTPTTSYTSTT-SYTPTP-SYTPTPSYTPTPSYTSTT 132
Query: 311 SFTRHSSPAVAAYSRPAIAPVSTHYSTPVISHYSTPGVAQVPEYLGARSNYASTPSLTIG 370
S+T +S + ST T S+ STP Y S Y ST S T
Sbjct: 133 SYTPTTSYTPTPSYTSTTSYTSTTSYTSTTSYTSTPSYTSTTSYTSTTS-YTSTTSYTST 191
Query: 371 GHISSANS 378
+S S
Sbjct: 192 TSYTSTTS 199
Score = 37.9 bits (84), Expect = 0.017
Identities = 46/179 (25%), Positives = 67/179 (37%), Gaps = 21/179 (11%)
Query: 213 STQYSTGVQYNQVQNL-PALQIPPGIQYAAPSVSQVPVPRITQY--FTPT-QYSSGASYI 268
+T Y++ Y + P P Y + S P P T +TPT Y+ SY
Sbjct: 11 TTSYTSTPSYTPTTSYTPTPSYTPTTSYTC-TTSYTPTPSYTPTPSYTPTTSYTPTTSYT 69
Query: 269 ASTAAQYLPTVKHAGAALNQVVVPISNGYSKGLSSAPAYSSASFTRHSSPAVAAYSRPAI 328
+T+ Y PT + + P Y+ S P S S T ++ P + P+
Sbjct: 70 PTTS--YTPTPSYTPTT-SYTPTP---SYTSTTSYTPTTSYTSTTSYT-PTPSYTPTPSY 122
Query: 329 APVSTHYST----PVISHYSTPGVAQVPEYLGARS-----NYASTPSLTIGGHISSANS 378
P ++ ST P S+ TP Y S +Y STPS T +S S
Sbjct: 123 TPTPSYTSTTSYTPTTSYTPTPSYTSTTSYTSTTSYTSTTSYTSTPSYTSTTSYTSTTS 181
Score = 36.7 bits (81), Expect = 0.039
Identities = 43/222 (19%), Positives = 69/222 (31%), Gaps = 14/222 (6%)
Query: 59 PAPAVVSQPTASIKYTPAIQYAAQPTYQTVESNYITAPVYTKELHGYXXXXXXXXXXXXX 118
P+ + T++ YTP Y P+Y T ++Y YT Y
Sbjct: 6 PSYTPTTSYTSTPSYTPTTSYTPTPSY-TPTTSYTCTTSYT-PTPSYTPTPSYTPTTSYT 63
Query: 119 KTV--TPLATYAQAPIIAKITAAPLIAKFSVAPAKTTYYSQNNVQQXXXXXXXXXXXXXX 176
T TP +Y P T+ ++ TT Y+
Sbjct: 64 PTTSYTPTTSYTPTPSYTPTTSYTPTPSYT----STTSYTPTTSYTSTTSYTPTPSYTPT 119
Query: 177 XNTVHQGPVVSQVFAAPTVRYAASPALKAQQNAQVDSTQYSTGVQYNQVQNLPALQIPPG 236
+ S PT Y +P+ + +T Y++ Y + P+
Sbjct: 120 PSYTPTPSYTSTTSYTPTTSYTPTPSY-TSTTSYTSTTSYTSTTSYT---STPSYTSTTS 175
Query: 237 IQYAAPSVSQVPVPRITQYFTPTQYSSGASYIASTAAQYLPT 278
S T Y + T Y+S SY ++T+ Y PT
Sbjct: 176 YTSTTSYTSTTSYTSTTSYTSTTSYTSTTSYTSTTS--YTPT 215
Score = 33.5 bits (73), Expect = 0.36
Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 12/154 (7%)
Query: 193 PTVRYAASPALKAQQNAQVDSTQYSTGVQYNQVQNL-PALQIPPGIQYAA-----PSVSQ 246
PT Y +P+ + + +T Y++ Y + P P Y + P+ S
Sbjct: 82 PTTSYTPTPSYTST-TSYTPTTSYTSTTSYTPTPSYTPTPSYTPTPSYTSTTSYTPTTSY 140
Query: 247 VPVPRITQYFTPTQYSSGASYIASTAAQYLPTVKHAGAALNQVVVPISNGYSKGLSSAPA 306
P P Y + T Y+S SY ++T+ P+ + + + Y+ S
Sbjct: 141 TPTP---SYTSTTSYTSTTSYTSTTSYTSTPSYTSTTSYTSTTSYTSTTSYTSTTSYTST 197
Query: 307 YSSASFTRHSSPAVAAYSRPAIAPVSTHYSTPVI 340
S S T ++S +Y+ +T Y++ I
Sbjct: 198 TSYTSTTSYTS--TTSYTPTPSYTATTSYTSTTI 229
>SB_27928| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 37.1 bits (82), Expect = 0.030
Identities = 33/129 (25%), Positives = 48/129 (37%), Gaps = 4/129 (3%)
Query: 253 TQYFTPTQYSSGASYIASTAAQYLPTVKHAGAALNQVVVPISNGYSKGLSSAPAYS---S 309
T Y T T Y+S SY ++T+ P+ + + + Y+ S P S +
Sbjct: 12 TSYTTTTSYTSTTSYTSTTSYTPTPSYTPTTSYTSTTSYTSTTSYTPTPSYTPTTSYTTT 71
Query: 310 ASFTRHSSPAVAAYSRPAIAPVSTHYSTPVISHYSTPGVAQVPEYLGARSNYASTPSLTI 369
S+T +S P + ST T S+ ST Y S Y ST S T
Sbjct: 72 TSYTSTTSYTTTTSYTPTTSYTSTTSYTSTTSYTSTTSYTSTTSYTSTTS-YTSTTSYTS 130
Query: 370 GGHISSANS 378
+S S
Sbjct: 131 TTSYTSTTS 139
>SB_40330| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 153
Score = 35.5 bits (78), Expect = 0.090
Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 4/119 (3%)
Query: 253 TQYFTPTQYSSGASYIASTAAQYLPTVKHAGAALNQVVVPISNGYSKGLS--SAPAYSSA 310
T Y + T Y+S +SY ++T+ + + + + Y+ S S +Y+S
Sbjct: 30 TSYTSTTSYTSTSSYTSTTSYTSTTSYTSTTSYTSTPSYTSTTSYTSTTSYTSTTSYTST 89
Query: 311 -SFTRHSSPAVAAYSRPAIAPVSTHYSTPVISHYSTPGVAQVPEYLGARSNYASTPSLT 368
S+T +S + ST TP S+ TP P Y + S Y T S T
Sbjct: 90 TSYTSTTSYTCTTSYTSTTSYTSTTSYTPTTSYTPTPSYTSTPSYTSSTS-YTPTTSYT 147
Score = 33.9 bits (74), Expect = 0.28
Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 6/130 (4%)
Query: 253 TQYFTPTQYSSGASYIASTAAQYLPTVKHAGAALNQVVVPISNGYSKGLS--SAPAY-SS 309
T Y + T Y+S SY ++T+ + + + + Y+ S S P+Y S+
Sbjct: 12 TSYTSTTSYTSTPSYTSTTSYTSTTSYTSTSSYTSTTSYTSTTSYTSTTSYTSTPSYTST 71
Query: 310 ASFTRHSS-PAVAAYSRPAIAPVSTHYSTPVISHYSTPGVAQVPEYLGARSNYASTPSLT 368
S+T +S + +Y+ +T Y T S+ ST Y S Y TPS T
Sbjct: 72 TSYTSTTSYTSTTSYTSTTSYTSTTSY-TCTTSYTSTTSYTSTTSYTPTTS-YTPTPSYT 129
Query: 369 IGGHISSANS 378
+S+ S
Sbjct: 130 STPSYTSSTS 139
Score = 29.9 bits (64), Expect = 4.5
Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 4/114 (3%)
Query: 255 YFTPTQYSSGASYIASTAAQYLPTVKHAGAALNQVVVPISNGYSKGLSSAPAYSSASFTR 314
Y T Y+S SY ++T+ P+ + + ++ Y+ S S S T
Sbjct: 2 YTFTTSYTSTTSYTSTTSYTSTPSYTSTTSYTSTTSYTSTSSYTSTTSYTSTTSYTSTTS 61
Query: 315 HSSPAVAAYSRPAIAPVSTHYSTPVISHYSTPGVAQVPEYLGARSNYASTPSLT 368
++S +Y+ +T Y T S+ ST Y ++Y ST S T
Sbjct: 62 YTS--TPSYTSTTSYTSTTSY-TSTTSYTSTTSYTSTTSYT-CTTSYTSTTSYT 111
>SB_59380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1226
Score = 33.9 bits (74), Expect = 0.28
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 42 SYPAPGIQLTHSGINVAPAPAVVSQPTASIKYTPAIQYAAQPTYQTVESN 91
+YPAP I H+G + P+ V P +++ +Q Q TYQ V SN
Sbjct: 211 AYPAPSISWEHNGQVIVPSKRHVVLPNGALQ-IHNVQQVDQGTYQCVASN 259
>SB_57482| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 789
Score = 33.9 bits (74), Expect = 0.28
Identities = 36/140 (25%), Positives = 55/140 (39%), Gaps = 6/140 (4%)
Query: 203 LKAQQNAQVDS-TQYSTGVQYNQVQNLPALQIPPGIQYAAPSVSQVPVPRITQYFTPTQY 261
+ Q + DS T + Q QN + Y P+ Q P P Q P Y
Sbjct: 369 VSVQDDNSTDSQTPQAQNTQTQGYQNAADQSLQQSAGYTYPA--QAPAPAPYQAPAPETY 426
Query: 262 SSGASYIASTAAQ--YLPTVKHAGAALNQVVVPISNGYSKGLSSAPAYSSASFTRHSSPA 319
++ A+ A+ +Q Y + A A P+S S +S PA+S AS+ S +
Sbjct: 427 AASANTTAAEISQQNYTASPTAAYPAYYPASSPVSYPASSP-ASYPAFSPASYPASSPAS 485
Query: 320 VAAYSRPAIAPVSTHYSTPV 339
A S A + + Y + V
Sbjct: 486 YPASSTAGNASIGSSYVSQV 505
>SB_1002| Best HMM Match : OTCace_N (HMM E-Value=0)
Length = 563
Score = 33.5 bits (73), Expect = 0.36
Identities = 25/80 (31%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Query: 326 PAIAPVSTHYSTPVISHYSTPGVAQVPEYLGARSNYASTPSLTIGGHISSANSV--KNVH 383
P +A S H S PV STP Q P P+ I GHI SA + + +H
Sbjct: 138 PPVADTSPHMSEPVSRGPSTPVAVQAPVLRDVMPVMPVIPAQVITGHILSAGQLTKEQLH 197
Query: 384 TEFLENYDAHPRYAFEYGVN 403
F +D E GV+
Sbjct: 198 VIFNVAHDMRRVVKREGGVD 217
>SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 33.5 bits (73), Expect = 0.36
Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 6/117 (5%)
Query: 253 TQYFTPTQYSSGASYIASTAAQYLPTVKHAGAALNQVVVPISNGYSKGLSSAPAYS-SAS 311
T Y + T Y+ SY +T+ P+ + + + Y+ P+Y+ + S
Sbjct: 6 TSYTSTTSYTHTTSYTHTTSYTSTPSYTCTTSYTSTPSYTSTTSYTP----TPSYTCTTS 61
Query: 312 FTRHSSPAVAAYSRPAIAPVSTHYSTPVISHYSTPGVAQVPEYLGARSNYASTPSLT 368
+T +S P + T TP S+ TP P Y ++Y ST S T
Sbjct: 62 YTSTTSYTSTTSYTPTTSYTPTTSYTPTTSYTPTPSYTPTPSYT-CTTSYTSTTSYT 117
>SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29)
Length = 1202
Score = 33.1 bits (72), Expect = 0.48
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 191 AAPTVRYAASPALKAQQNAQVDSTQYSTGV-QYNQVQNLPALQIPP 235
AA A + A A Q Q+D Y TG QYNQ Q +P Q PP
Sbjct: 466 AATATATATATATAALQEQQMDPYGYQTGQNQYNQNQQVPHPQHPP 511
>SB_57270| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 427
Score = 32.7 bits (71), Expect = 0.64
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 19 HDPDLNYHLSQVQKVSNCA--DSGYSYPAPGIQLTHSGINVAPAPAVVSQPTASIKYTPA 76
H P H + S C S Y+ + HS V +P V +++++P
Sbjct: 108 HSPCTVQHSPYTVQHSPCTVQHSPYTVQHSPYTVQHSPYAVQHSPYTVQHSPYTVQHSP- 166
Query: 77 IQYAAQPTYQTVESNYITA-PVYT 99
Y AQP Y T + Y TA P+Y+
Sbjct: 167 --YTAQPIYSTAQFIYSTAQPIYS 188
>SB_44730| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1346
Score = 32.3 bits (70), Expect = 0.84
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 3/99 (3%)
Query: 246 QVPVPRITQYFTPTQYSSGASYIASTAA---QYLPTVKHAGAALNQVVVPISNGYSKGLS 302
Q PV ++ F+PTQ I S++ Q PT L Q + GY
Sbjct: 574 QAPVSVVSTSFSPTQAVQALIQIHSSSQLGHQAFPTSAAETMPLPQQIFQSPGGYPVASL 633
Query: 303 SAPAYSSASFTRHSSPAVAAYSRPAIAPVSTHYSTPVIS 341
+ A+S S + P + P ++ H P+++
Sbjct: 634 AGIAHSVPSHINQNQPITVQCTLPTFTQLANHLRQPLVT 672
>SB_44248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 842
Score = 31.5 bits (68), Expect = 1.5
Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 286 LNQVVVP---ISN--GYSKGLSSAPAYSSASFTRHSSPAVAAYSRPAIAPVSTHYSTPVI 340
L VV P I+N G +G S A A +S AVAA + A+A +T I
Sbjct: 548 LQNVVAPNGLIANLFGPIEGTSRALFVQFAFAAVTASLAVAAPAGIAVAVAATAVVAVAI 607
Query: 341 SHYSTPGVAQVPEYLGARSNYASTPSLTIGGHISSANSVKNVHTEFL 387
+ T G V E GA + + + T+GG ++ A K+VH+E +
Sbjct: 608 AAAQTVG-GFVAE--GALAFLPAVAAQTVGGFVAEAQKYKDVHSELM 651
>SB_25257| Best HMM Match : Pkinase (HMM E-Value=4e-10)
Length = 892
Score = 31.5 bits (68), Expect = 1.5
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 259 TQYSSGASYIASTAAQYLPTVKHAGAALNQVVVPISNGYSKGLSSAPAYSSASFTRHSSP 318
TQ+ + AS + + + A + + + S+G SS YSSAS + HSS
Sbjct: 712 TQWGNSASSYKRSVERTPSNESDSRVAAQAIHINAPHTCSEGSSS---YSSASTSLHSSE 768
Query: 319 AVAAYSRPAIAPVSTHYSTPVISHYST 345
A R +YS+ +S+YS+
Sbjct: 769 ASRGQGRGFAHAPGVYYSSETMSNYSS 795
>SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)
Length = 1571
Score = 31.1 bits (67), Expect = 1.9
Identities = 59/282 (20%), Positives = 92/282 (32%), Gaps = 28/282 (9%)
Query: 119 KTVTPLATYAQAPIIAKITAAPLIAKFSVAPAKTTYYSQNNVQQXXXXXXXX-XXXXXXX 177
K T L T + TA L A ++A TY + +
Sbjct: 1243 KNATALPTTGANATLVATTATGLHANVTLASPTGTYVNATKEPKVDQNATAVPTSRENAT 1302
Query: 178 NTVHQGPVVSQVFAAPTVRYAASPALKAQQNAQVDSTQYSTGVQYNQVQ-NLPALQIPPG 236
++V P+V P + P + V +TQY Q NL + G
Sbjct: 1303 SSVTSQPIVMNTTKQPVLNATLEPTISLLNRTAVPTTQYKGNDTVQPTQSNLTVTETFTG 1362
Query: 237 IQYAAPSVSQVPVPRITQYFTPTQYSSGASYIASTAAQYLPTVKHAGAALNQVVVP--IS 294
+PS +I+ +PTQ ++ + + T K + V P +
Sbjct: 1363 -SLRSPST------KISSTTSPTQAANVSVPMTKETRTTTATTKSLAFNKTRTVTPTAVG 1415
Query: 295 NGYSKGLSSAPAYSSASFTRHSSPAVAAYSRPAIAPVSTHYSTPVISHYSTPGVAQVPEY 354
N K +S P + + + S P A + P+ T +T EY
Sbjct: 1416 NATIKATASTPT-NDTTVSPTSEP--EAMTEPSFPTSPTRGNT-------------TDEY 1459
Query: 355 LGARSNYAST-PSLTIGGHISSANSVKNVHTEFLENYDAHPR 395
L A N ++T P T S N+ T LE+ PR
Sbjct: 1460 LRAGDNTSTTAPPFTAPYSSQGPTSAHNISTAVLESNVTTPR 1501
>SB_39254| Best HMM Match : GRP (HMM E-Value=3.3)
Length = 88
Score = 31.1 bits (67), Expect = 1.9
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 363 STPSLTIGGHISSANSVKNVHTEFLENYDAHPRYAFEYGVNDPHT 407
STP ++ G H N HT + Y+ Y + G ND HT
Sbjct: 9 STPCVSHGSHTYYRNGYNGSHTYYRNGYNGSHTY-YRNGYNDSHT 52
>SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)
Length = 1197
Score = 31.1 bits (67), Expect = 1.9
Identities = 33/130 (25%), Positives = 49/130 (37%), Gaps = 4/130 (3%)
Query: 234 PPGIQYAAPSVSQVPVPRITQYFTPTQYSSGASYIASTAAQYLPTVKHAGAALNQVVVPI 293
P +P+ + P TP SS AS++ + GAA +
Sbjct: 963 PAATSPVSPAAAPSTTPGAAPSTTPGAESSSTPGAASSSTPGAALSRTPGAAPSSTPGAA 1022
Query: 294 SNGYSKGL-SSAPAYSSASF---TRHSSPAVAAYSRPAIAPVSTHYSTPVISHYSTPGVA 349
S+ SS P + +S T S+P A+ S P AP ST + I+ + P V+
Sbjct: 1023 SSTTPGAAPSSTPGAAMSSIPGATSSSTPGAASSSTPGAAPSSTPGAASSITRRADPSVS 1082
Query: 350 QVPEYLGARS 359
GA S
Sbjct: 1083 PEASSSGAFS 1092
>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1850
Score = 30.7 bits (66), Expect = 2.6
Identities = 54/206 (26%), Positives = 61/206 (29%), Gaps = 12/206 (5%)
Query: 13 ANALAYHDPDLNYHLSQ--VQKVSNCADSGYSYPAPGIQLTHSGINVAPAPAVVSQPTAS 70
A A AY D Y Q+ S PAP Q S APA A +Q A+
Sbjct: 1264 APASAYPSQDAAYQTGYPAYQQGGQAYPSAAPAPAPAAQAYPSA---APATAYPTQAPAN 1320
Query: 71 IKYTPAIQYAAQPTYQTVESNYITAPVYTKELHGYXXXXXXXXXXXXXKTVTPLATY-AQ 129
PA Y AQ + P T P Y AQ
Sbjct: 1321 PTAAPATAYPAQAPVNPTAAPATAYPAQAPVNPTAAPATAYPAQSPFNPTAAPATAYPAQ 1380
Query: 130 APIIAKI-TAAPLIAKFSVAPAKTTYYSQNNVQQXXXXXXXXXXXXXXXNTVHQGPV-VS 187
AP TA P A F+ A Q Q HQG ++
Sbjct: 1381 APANPTAGTAYPTQAPFNTTAAPV---YQTAGQPAQSNPTQSAQPMGNFFAAHQGQAYLA 1437
Query: 188 QVFAAPTVRYAASPALKAQQNAQVDS 213
AAPT Y A PA A A S
Sbjct: 1438 ATGAAPTAGYPA-PAQAATYQAAAPS 1462
>SB_2244| Best HMM Match : zf-CCCH (HMM E-Value=0.004)
Length = 445
Score = 30.7 bits (66), Expect = 2.6
Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 299 KGLSSAPAYSSASFTRHSSPAVAAYSRPAIAPVSTHYSTPVISHYSTP--GVAQVPEYLG 356
K ++ A A SA F + A A R P +T TP + +TP A P Y G
Sbjct: 161 KEVNKALAMESAGFMNALATAAVAAPRKRKRPATTAQKTPTATTPTTPTASTAVKPSYTG 220
Query: 357 ARSNYASTPSLTIG 370
S S T G
Sbjct: 221 ILDEIMSNQSQTHG 234
>SB_16224| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1127
Score = 30.7 bits (66), Expect = 2.6
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 275 YLPTVKHAGAALNQVVVPISNGYSKGLSSAPAYS 308
Y T + A L V+ +S YS LSS PA+S
Sbjct: 963 YFTTERKAAIPLEDAVLKLSESYSTSLSSTPAFS 996
>SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)
Length = 1052
Score = 29.9 bits (64), Expect = 4.5
Identities = 35/144 (24%), Positives = 59/144 (40%), Gaps = 7/144 (4%)
Query: 228 LPALQIPPGIQYAAPSVSQVPVPRITQYFTPTQYSSGASYIASTAAQYLPTVKHAGAALN 287
LPAL Y +P + P ++ AS S A+ + +
Sbjct: 621 LPALHTVLSALYTLLPALHTVLPAL-HTLLPALHTLAASPSYSPASPSYTPASPSYTPTS 679
Query: 288 QVVVPISNGYSKGLSSAPAYSSASFTRHSSPAVAAYSRPAIAPVSTHYSTPVISHY-STP 346
P S YS ++P+YS AS + S+ + + P+ +P S YS + S+ ++P
Sbjct: 680 PSYSPASPSYSP---TSPSYSPASPSYTSASPSYSPASPSYSPTSPSYSPAIPSNSPASP 736
Query: 347 GVAQV-PEYLGARSNYA-STPSLT 368
+ P Y A +Y ++PS T
Sbjct: 737 SYSPASPSYTPASPSYTPASPSYT 760
>SB_20126| Best HMM Match : TSP_1 (HMM E-Value=0.0041)
Length = 448
Score = 29.9 bits (64), Expect = 4.5
Identities = 36/146 (24%), Positives = 54/146 (36%), Gaps = 8/146 (5%)
Query: 226 QNLPALQIPPGIQYAAPSVSQVP----VPRITQYFTPTQYSSGASYIASTAAQYLPTVKH 281
+ LPA P Q P + P VPR Y+ T YS+G+ Y AA++
Sbjct: 48 RRLPAPNDIPAFQAGNPFLGYPPEFFSVPRYDGYWRGTPYSAGSPYGGYNAAKHRQDESV 107
Query: 282 AGAALNQVVVPISNGYSKGLSSAPAYSSASFTRHSSPAVA---AYSRPAIAPVSTHYSTP 338
N V ++ + GL++ Y + + S A Y IAP + S
Sbjct: 108 GLGYRNSPYVSTASQMA-GLNNGATYMNNAADTSGSELTAPPQGYQNLNIAPQFSAGSNS 166
Query: 339 VISHYSTPGVAQVPEYLGARSNYAST 364
IS+ G Q + + N T
Sbjct: 167 DISNVQQMGQLQGDQRFSEQPNLFDT 192
>SB_58319| Best HMM Match : Herpes_BFRF1 (HMM E-Value=3.6)
Length = 316
Score = 29.5 bits (63), Expect = 5.9
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 236 GIQYAAPSVSQVPVPRITQYFTPTQYSSGASYIASTAAQYLPT 278
GI + ++ +P+P + Y + S+ S +S AAQ+LP+
Sbjct: 49 GISHMLETMKFLPLPAVGDYTPDKESSANLSLDSSAAAQFLPS 91
>SB_48133| Best HMM Match : RYDR_ITPR (HMM E-Value=2)
Length = 671
Score = 29.5 bits (63), Expect = 5.9
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 10 LILANALAYHDPDLNYHLSQVQKVSNCADSGYSY 43
++ A L+ HDP N + + K+ C D G S+
Sbjct: 584 VLAATELSEHDPSTNPWIQLLMKICECGDDGESF 617
>SB_10204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 415
Score = 29.5 bits (63), Expect = 5.9
Identities = 45/203 (22%), Positives = 75/203 (36%), Gaps = 16/203 (7%)
Query: 204 KAQQNAQVDSTQ-YSTGVQYNQVQNLPALQIPPGIQYAAPSVSQVPVPRITQYFTPTQYS 262
KA +N +T+ YST N + + ++ + T+ +T YS
Sbjct: 182 KATENYSTKATENYSTKAAENYSTKATENYSTKATENYSTKATENYSTKATENYTTENYS 241
Query: 263 SGASYIASTAA----QYLPTVKHAGAALNQVVVPISNGYSKGLS------SAPAYSSASF 312
+ A+ ST A T ++ A+ + YS + + YS+ +
Sbjct: 242 TKATENYSTKAIENYSTKATENYSTKAIKNYSTKATKNYSTKATENYSNKATKNYSTKAT 301
Query: 313 TRHSSPAVAAYSRPAIAPVST----HYSTPVISHYSTPGVAQVPEYLGAR-SNYASTPSL 367
+S+ A+ YS AI ST +Y T +YST + SN A
Sbjct: 302 ENYSTKAIENYSNKAIENYSTKATENYITKARENYSTKAIENYSTKATENYSNKAIENYS 361
Query: 368 TIGGHISSANSVKNVHTEFLENY 390
T S +++N T+ ENY
Sbjct: 362 TKATENYSNKAIENYSTKATENY 384
>SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23)
Length = 434
Score = 29.5 bits (63), Expect = 5.9
Identities = 39/142 (27%), Positives = 51/142 (35%), Gaps = 18/142 (12%)
Query: 259 TQYSSGASYI--ASTAAQYLPTVKHAGAALNQVVVPISNGYSKGLSSAPAYSSASFTRHS 316
T S+ YI AST Y+ + + P ++ Y S+ Y + T H
Sbjct: 47 THASTTHHYIVHASTTHPYITYASTTHPHIARASTPTTHPYITHASTTHHYIVHASTTH- 105
Query: 317 SPAVAAYSRPAIAPVSTHYSTPV----ISHYSTPGVAQVPEYLGARSNYASTPSLTIGGH 372
P + S P P H STP I+H STP +ASTP T H
Sbjct: 106 -PYITYASTPTTHPHIPHASTPTTHPHITHASTPTT-------HPHITHASTP--TTHPH 155
Query: 373 ISSANSVKNVHTEFLENYDAHP 394
I+ A S H HP
Sbjct: 156 ITHA-STPTTHPHIAHASTTHP 176
>SB_49341| Best HMM Match : Rad21_Rec8_N (HMM E-Value=2.3)
Length = 549
Score = 29.5 bits (63), Expect = 5.9
Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 3/112 (2%)
Query: 264 GASYIASTAAQYLPTVKHAGAALNQVVVPISNGYSKGLSSAPAYSSASFTRH-SSPA-VA 321
G+S +S A+ PT+ N V P + S P S+ S T S+P+
Sbjct: 350 GSSQNSSRASTPSPTMGKTLIQYNPVSTPSNTPPVSTPSHTPPVSTPSHTPPVSTPSHTP 409
Query: 322 AYSRPA-IAPVSTHYSTPVISHYSTPGVAQVPEYLGARSNYASTPSLTIGGH 372
S P+ PVST TP +S S P + S + TP ++ H
Sbjct: 410 PVSTPSHTPPVSTPSHTPPVSTPSNTPPVSTPSHTPPVSTPSHTPPVSTPSH 461
>SB_42552| Best HMM Match : RhoGAP (HMM E-Value=0)
Length = 945
Score = 29.5 bits (63), Expect = 5.9
Identities = 37/180 (20%), Positives = 72/180 (40%), Gaps = 10/180 (5%)
Query: 230 ALQIPPGIQYAAPSVSQVPVPRITQYFTPTQYSSGASYIASTAAQYLPTVKHAGAALNQV 289
A+ + + A P S V + Q + + SSG+ S+ +H+ +++NQ
Sbjct: 287 AIPLRKAVAKATPDTSNGIVKKSKQGSSSSSGSSGSDSKDSSQEALTRVRRHSASSINQ- 345
Query: 290 VVPISNGYSKGLSSAPAYSSASFTRHSSPAVAAYSRPAIAPVSTHYSTPVI---SHYSTP 346
+ G+S+ S S+ + SP+ + A+ +S+ S I Y +P
Sbjct: 346 --NFNRGFSESADS--KRSNGISEQPGSPSWKSRLIDALTLLSSSASASCIIDKQSYLSP 401
Query: 347 GVAQVPEYLGARSNYASTPSLTIGGHISSANSVKNVHTEFLENYDAHPRYAFEYGVNDPH 406
QVP + + L + G + S K + + E +D+ + F ++PH
Sbjct: 402 ASPQVPTIVNQAIEHLENYGLHVLGIFRTGGSKKRM-KQMREQFDSGEKTQFN-AEDNPH 459
>SB_7402| Best HMM Match : Extensin_2 (HMM E-Value=2)
Length = 267
Score = 29.5 bits (63), Expect = 5.9
Identities = 34/154 (22%), Positives = 57/154 (37%), Gaps = 9/154 (5%)
Query: 251 RITQYFTPTQYSSGASYIASTAAQYLPTVKHAGAALNQVVVPISNGYSKGLSSAPAYSSA 310
R+ +YF T + Q V + LN P + +S +Y+S
Sbjct: 93 RLMRYFLLTHLCETLEKVKDAEDQLAARVGYIELDLNSATRPPRYTPTPSYTSTTSYTST 152
Query: 311 -SFTRHSS-PAVAAYSRPAIAPVSTHYS-----TPVISHYSTPGVAQVPEYLGARSNYAS 363
S+T +S +Y+ +T Y+ TP S+ STP Y ++Y S
Sbjct: 153 TSYTPTTSYTPTPSYTSTTSYTSTTSYTSTTSYTPTPSYTSTPSYTSTTSYT-CTTSYTS 211
Query: 364 TPSLT-IGGHISSANSVKNVHTEFLENYDAHPRY 396
T S T + S+ + +Y ++P Y
Sbjct: 212 TTSYTCTTSYTSTTSYTPTTSYTSTTSYTSNPSY 245
>SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)
Length = 797
Score = 29.1 bits (62), Expect = 7.8
Identities = 32/142 (22%), Positives = 58/142 (40%), Gaps = 12/142 (8%)
Query: 180 VHQGPVVS-QVFAAPTVRYAASPALKAQQNAQVDSTQYSTGVQYN--QVQNLPALQIPPG 236
VH P + +P VR++ + A + +V + ++ Y+ +V + P +P
Sbjct: 649 VHHSPRTPLPAYTSPRVRHSPRTPVPAYTSPRVHQSPRTSLPAYSTPRVLHSPRTPVPA- 707
Query: 237 IQYAAPSVSQVPVPRITQYFTPTQYSSGASYIASTAAQYLPTVKHAGAALNQVVVPISNG 296
Y +P V P + YFTP+ + S + + + P V H+ L +
Sbjct: 708 --YTSPRVLHSPRTPLPAYFTPSVHQSPRTPVPVYTS---PRVHHSPRTLFPAYT-TPHV 761
Query: 297 YSKGLSSAPAYSSASFTRHSSP 318
+ + PAY+S H SP
Sbjct: 762 HQSPRTPVPAYTSPRV--HQSP 781
>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
Length = 812
Score = 29.1 bits (62), Expect = 7.8
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 318 PAVAAYSRPAIAPVSTHYSTPVISHYSTPGVAQVPEYLGARSNYASTP 365
PA S PA AP + + + PG+ Q P Y+ + Y+S P
Sbjct: 536 PAPPPRSPPAAAPCNPAMAPQGCNSMQQPGMYQQPSYIPGYTAYSSVP 583
>SB_13864| Best HMM Match : FtsX (HMM E-Value=1.6)
Length = 269
Score = 29.1 bits (62), Expect = 7.8
Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 3/135 (2%)
Query: 245 SQVPVPRITQYFTPTQYSSGASYIASTAAQYLPTVKHAGAALNQVVVPISNGYSKGLSSA 304
SQV R+T F T ++ A+ A+ AA T A AA + + ++A
Sbjct: 93 SQVRTQRLTAPFIRTAATATAAAAATAAASVAATA--AAAATAAATATATTTATAATATA 150
Query: 305 PAYSSASFTRHSSPAVAAYSRPAIAPVSTHYSTPVISHYSTPGVAQVPEYLGARSNYAST 364
A ++A+ T ++ V A + + +T +T + +T + A +T
Sbjct: 151 AATATATGTTTATATVTATATATVTAAATATATATATATATT-TSTATVTATATVTVTAT 209
Query: 365 PSLTIGGHISSANSV 379
+ T+ +++A +V
Sbjct: 210 AATTVTATVTAATTV 224
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.312 0.125 0.361
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,405,580
Number of Sequences: 59808
Number of extensions: 599693
Number of successful extensions: 1305
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1239
Number of HSP's gapped (non-prelim): 80
length of query: 460
length of database: 16,821,457
effective HSP length: 85
effective length of query: 375
effective length of database: 11,737,777
effective search space: 4401666375
effective search space used: 4401666375
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 62 (29.1 bits)
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