GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000285-TA|BGIBMGA000285-PA|IPR000618|Insect cuticle
protein
         (460 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    29   0.062
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        24   3.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   9.4  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 29.5 bits (63), Expect = 0.062
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 389 NYDAHPRYAFEY--GVNDPHTGDIKQQKEERDGEVVKGQYSLVEPDGSVRTVDYVADWET 446
           N+D +    FE   G++   +G  KQ   E    V +G  S   PDG   ++ YVAD E 
Sbjct: 37  NFDGNYINNFETSNGISHQESGQPKQVDNETP-VVSQGSDSYTAPDGQQVSITYVAD-EN 94

Query: 447 GF 448
           GF
Sbjct: 95  GF 96


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 3/72 (4%)

Query: 24  NYHLSQVQKVSNCADSGYSYPAPGIQLTHSGINVAPAPAVVSQPTA---SIKYTPAIQYA 80
           ++H  Q Q V+  A    S   PG   T +      A A V   TA   S +YT ++   
Sbjct: 98  HHHHQQQQAVAAAAFGATSSMVPGFGSTAASSAALAAAAAVDAATAGDKSCRYTASLAGN 157

Query: 81  AQPTYQTVESNY 92
             P       NY
Sbjct: 158 VAPASADPMVNY 169


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 13/50 (26%), Positives = 23/50 (46%)

Query: 12  LANALAYHDPDLNYHLSQVQKVSNCADSGYSYPAPGIQLTHSGINVAPAP 61
           L + + Y++ D NY ++ + K +       S+  P I  +   INV   P
Sbjct: 117 LPDIVLYNNADGNYEVTLMTKATLKYTGDVSWKPPAIYKSSCEINVEYFP 166


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.125    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,566
Number of Sequences: 429
Number of extensions: 5053
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 3
length of query: 460
length of database: 140,377
effective HSP length: 60
effective length of query: 400
effective length of database: 114,637
effective search space: 45854800
effective search space used: 45854800
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 45 (22.2 bits)