Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000284-TA|BGIBMGA000284-PA|undefined
         (76 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    23   0.28 
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    23   0.28 
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   1.9  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    19   4.5  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    19   5.9  
AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    19   7.8  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    19   7.8  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    19   7.8  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    19   7.8  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    19   7.8  

>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 23.4 bits (48), Expect = 0.28
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 29  KEFRDFDSLLEHLRLRNLAKKFEYK 53
           K F D  +L +HLR+ +  K +E K
Sbjct: 85  KAFSDSSTLTKHLRIHSGEKPYECK 109


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 23.4 bits (48), Expect = 0.28
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 29  KEFRDFDSLLEHLRLRNLAKKFEYK 53
           K F D  +L +HLR+ +  K +E K
Sbjct: 341 KAFSDSSTLTKHLRIHSGEKPYECK 365


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 20.6 bits (41), Expect = 1.9
 Identities = 8/11 (72%), Positives = 8/11 (72%)

Query: 4   GGRDYTRGPGG 14
           GGRD  RG GG
Sbjct: 97  GGRDGDRGDGG 107


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 19.4 bits (38), Expect = 4.5
 Identities = 9/22 (40%), Positives = 10/22 (45%)

Query: 29  KEFRDFDSLLEHLRLRNLAKKF 50
           K F   D L  HLR     K+F
Sbjct: 354 KRFTRSDELQRHLRTHTGEKRF 375


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
          homeodomain protein protein.
          Length = 232

 Score = 19.0 bits (37), Expect = 5.9
 Identities = 6/27 (22%), Positives = 13/27 (48%)

Query: 3  TGGRDYTRGPGGQIIILPRNVHTDEPK 29
          T GR+         +++P+ +H   P+
Sbjct: 49 TDGRESLSPSSAHTVLIPQPLHPSVPR 75


>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
          monooxygenase protein.
          Length = 463

 Score = 18.6 bits (36), Expect = 7.8
 Identities = 8/28 (28%), Positives = 16/28 (57%)

Query: 18 ILPRNVHTDEPKEFRDFDSLLEHLRLRN 45
          +L R+V   +    ++FDS  +H+ + N
Sbjct: 38 LLLRDVELIKQIGVKEFDSFHDHVSVSN 65


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 18.6 bits (36), Expect = 7.8
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 65   NKTPESFWN 73
            N+  E+FWN
Sbjct: 1189 NRNEETFWN 1197


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 18.6 bits (36), Expect = 7.8
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 65   NKTPESFWN 73
            N+  E+FWN
Sbjct: 1189 NRNEETFWN 1197


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 18.6 bits (36), Expect = 7.8
 Identities = 7/23 (30%), Positives = 10/23 (43%)

Query: 52  YKWDTDRLQNREPNKTPESFWNA 74
           Y+W        +PN  P  F +A
Sbjct: 124 YEWIKKTSYQSQPNPEPADFADA 146


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 18.6 bits (36), Expect = 7.8
 Identities = 7/23 (30%), Positives = 10/23 (43%)

Query: 52  YKWDTDRLQNREPNKTPESFWNA 74
           Y+W        +PN  P  F +A
Sbjct: 124 YEWIKKTSYQSQPNPEPADFADA 146


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.138    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,768
Number of Sequences: 317
Number of extensions: 678
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 76
length of database: 114,650
effective HSP length: 45
effective length of query: 31
effective length of database: 100,385
effective search space:  3111935
effective search space used:  3111935
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)
S2: 36 (18.6 bits)