Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000284-TA|BGIBMGA000284-PA|undefined
         (76 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch...    27   0.30 
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    26   0.69 
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy...    25   1.6  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    24   2.1  
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    23   3.7  
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    23   3.7  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    23   3.7  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    23   4.9  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    23   6.4  
SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces p...    23   6.4  
SPCC330.10 |pcm1||mRNA capping methyltransferase|Schizosaccharom...    23   6.4  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    22   8.5  
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    22   8.5  

>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 27.1 bits (57), Expect = 0.30
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)

Query: 42  RLRNLAKKFEYKWDT--DRLQNREPNKTPES 70
           R RN  KKF + WD   D +++ E + +PE+
Sbjct: 122 RRRNADKKFVFDWDATDDTMKDAETSASPEA 152


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 0.69
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%)

Query: 50  FEYKWDTDRL--QNREPNKTPESF 71
           +EY W  DRL  +NR+P    E F
Sbjct: 295 YEYTWSNDRLWSKNRQPLNNSECF 318


>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 478

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 22  NVHTDEPKEFRDFDSLLEHLRLRNLAKKF 50
           +VH D P EF  FD     + + NL + F
Sbjct: 328 SVHIDVPAEFEAFDERTAVVNVDNLKEMF 356


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 16   IIILPRNVHTDEPKEFRDFDSLLEHLRLRNLAKKFE 51
            I IL R +  DE  E   FD L+   +L+  A+K E
Sbjct: 1450 ISILRRLLEFDEVVELMMFDDLVNIFKLQGRARKTE 1485


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 7/57 (12%)

Query: 19  LPRNVHTDEPKEFRDFDSLLEHLRLRNLAKKFEYKWDTDRLQNREPNKTPESFWNAK 75
           L   V   EPK F DF +  E + +R+L +      +   L N +P KT  +F N K
Sbjct: 436 LESKVPIREPKSFADFKNHPEFVLIRHLRR------EEALLPNAKPVKT-ATFGNGK 485


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 16/45 (35%), Positives = 18/45 (40%)

Query: 22  NVHTDEPKEFRDFDSLLEHLRLRNLAKKFEYKWDTDRLQNREPNK 66
           N   D P   R   +LL  LR  NLA         +RL    PNK
Sbjct: 560 NHSNDTPYRLRLLQNLLSQLRRVNLATLSAIITHLNRLITLTPNK 604


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 27  EPKEFRDFDSLLEHLRLRNLAKKFEYKWDTDRLQN 61
           EPK+F      ++ + L   +    Y+WD   L N
Sbjct: 662 EPKKFICLGDCVKEVSLNATSWMLFYRWDVHELSN 696


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 16  IIILPRNVHTDEPKEFRDFD 35
           II+ PR++ T+E  EF  +D
Sbjct: 365 IILWPRSLCTEESCEFHQYD 384


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 35  DSLLEHLRLRNLAKKFEYKWDTDRLQNRE 63
           +SLL+ L   N+ +K  YK  TD   +R+
Sbjct: 242 NSLLQSLFFTNIFRKTVYKIPTDNDDSRD 270


>SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 257

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 2/24 (8%)

Query: 14  GQIIILP--RNVHTDEPKEFRDFD 35
           G I I P  RN +T+E  EF  FD
Sbjct: 135 GMINISPVGRNANTEERNEFERFD 158


>SPCC330.10 |pcm1||mRNA capping
           methyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 389

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 3/37 (8%)

Query: 35  DSLLEHLRLRNLAKKFEYKWDTDRLQNREPNKTPESF 71
           D +++H+++    K  E +W  D  + R P   P SF
Sbjct: 258 DVIVKHIKM---LKPGEKEWGNDIYKVRFPESPPRSF 291


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 32  RDFDSLLEHLRLRNLAKKFEYKWDTDRLQNR 62
           R+ DSL   +      K+ +Y+++  +LQNR
Sbjct: 263 REKDSLSTEMEEDKSNKEVDYEYEIRQLQNR 293


>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 15/53 (28%), Positives = 25/53 (47%)

Query: 21  RNVHTDEPKEFRDFDSLLEHLRLRNLAKKFEYKWDTDRLQNREPNKTPESFWN 73
           R++ T+E +EF D   L ++L L +   +     D D ++ R   K   S  N
Sbjct: 249 RSLQTEELEEFSDHYELTKNLELPSSLVECLQDCDLDGIKIRHKLKFSVSLRN 301


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.138    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 418,170
Number of Sequences: 5004
Number of extensions: 15415
Number of successful extensions: 37
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 13
length of query: 76
length of database: 2,362,478
effective HSP length: 56
effective length of query: 20
effective length of database: 2,082,254
effective search space: 41645080
effective search space used: 41645080
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)