Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000284-TA|BGIBMGA000284-PA|undefined
         (76 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3786| Best HMM Match : THAP (HMM E-Value=7.5e-07)                   31   0.17 
SB_25066| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.31 
SB_1307| Best HMM Match : Filament (HMM E-Value=0.13)                  28   0.93 
SB_8588| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   2.2  
SB_4758| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   2.8  
SB_40147| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   3.8  
SB_54434| Best HMM Match : Glyco_hydro_65C (HMM E-Value=9.5)           26   5.0  
SB_52783| Best HMM Match : FlaC_arch (HMM E-Value=0.53)                26   5.0  
SB_45447| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.6  
SB_42471| Best HMM Match : FlaC_arch (HMM E-Value=0.57)                25   6.6  
SB_13243| Best HMM Match : COX17 (HMM E-Value=1.7)                     25   6.6  
SB_9903| Best HMM Match : Lipase_GDSL (HMM E-Value=0.0051)             25   6.6  
SB_26745| Best HMM Match : ARID (HMM E-Value=4.4)                      25   6.6  
SB_16869| Best HMM Match : Cytochrom_C_2 (HMM E-Value=4.5)             25   6.6  
SB_13850| Best HMM Match : WD40 (HMM E-Value=3.1e-06)                  25   6.6  
SB_5363| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   6.6  
SB_17140| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.7  
SB_55441| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.7  
SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.7  
SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032)         25   8.7  
SB_4473| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   8.7  

>SB_3786| Best HMM Match : THAP (HMM E-Value=7.5e-07)
          Length = 807

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 12  PGGQIIILPRNV--HTDEPKEFRDFDSLLEHLRLRNLAKKFEYKWDTDRLQNREPNKTPE 69
           P  ++I LPR+   HT EP++  +  S +E   +R + ++    + T R    +P   P 
Sbjct: 696 PPSRVIPLPRDATTHTPEPQQEPEVQSHMEPDHVRYMLERMSVNYPTSRSSFVDPRTYPR 755

Query: 70  SF 71
           ++
Sbjct: 756 TY 757


>SB_25066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1167

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 17/66 (25%), Positives = 25/66 (37%)

Query: 5   GRDYTRGPGGQIIILPRNVHTDEPKEFRDFDSLLEHLRLRNLAKKFEYKWDTDRLQNREP 64
           G  Y + P GQ   +P    TDE     D+DS  + +  +             R+  RE 
Sbjct: 620 GHRYNKAPEGQDFDVPEENGTDEINSDSDYDSWFQEMDRKRQKALHSSNESARRMVKREL 679

Query: 65  NKTPES 70
            + P S
Sbjct: 680 KRNPPS 685


>SB_1307| Best HMM Match : Filament (HMM E-Value=0.13)
          Length = 916

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 19  LPRNVHTDEPKEFRDFDSLLEHLRLRNLAKKFEYKWDTDRLQNREPNKT 67
           L   +H  E K++RD  + LE LRL +  +  ++K +  +L++ E +KT
Sbjct: 297 LKSKLHEAE-KKYRDQQTTLEDLRLDHEEETRKFKKEIAKLEDNERSKT 344


>SB_8588| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/50 (24%), Positives = 28/50 (56%)

Query: 10 RGPGGQIIILPRNVHTDEPKEFRDFDSLLEHLRLRNLAKKFEYKWDTDRL 59
          +G GG +I+LPR++     +E  ++ +L + L  +++     + ++ D L
Sbjct: 34 QGAGGLLILLPRDLSKLNQQEVEEWQTLEKELLFQSVPVAVYFAYEDDYL 83


>SB_4758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 788

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)

Query: 29  KEFRDFDSLLEHLRLRNLAKKFEYKWDTDRLQNREPN 65
           +EF   D+L +HL+L  + KK E       ++NRE N
Sbjct: 558 REFYRKDNLNQHLKLCKVLKKREQDIKYTNVRNREGN 594


>SB_40147| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 3/35 (8%)

Query: 29 KEFRDFDSLLEHLRLRNLAKKFEYKWDTDRLQNRE 63
          K+F++ +  L+ LR+  + K FE   + +R +NRE
Sbjct: 7  KDFKNREGFLKSLRISKIVKDFE---NRERFRNRE 38


>SB_54434| Best HMM Match : Glyco_hydro_65C (HMM E-Value=9.5)
          Length = 384

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 8   YTRGPGGQIIILPRNVHTDEPKEFRDFDSLLEHLRLRNLAKKF 50
           + RGP G +   PR  ++  P+++ ++ +  E L+  N A ++
Sbjct: 253 FLRGPSGDVRPEPREPYSYMPEQYINYST--EQLKFNNYATRY 293


>SB_52783| Best HMM Match : FlaC_arch (HMM E-Value=0.53)
          Length = 300

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 33 DFDSLLEHLRLRNLAKKFEYKWDTDRLQNRE 63
          D   + EH ++ ++ KK ++KW  D  Q +E
Sbjct: 3  DIVGITEHKKILSINKKKQFKWSGDSDQLKE 33


>SB_45447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 33 DFDSLLEHLRLRNLAKKFEYKWDTDRLQNRE 63
          D   + EH +L ++ KK +++W  D  Q +E
Sbjct: 3  DIVGITEHKKLLSINKKKQFRWSGDSDQLKE 33


>SB_42471| Best HMM Match : FlaC_arch (HMM E-Value=0.57)
          Length = 300

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 33 DFDSLLEHLRLRNLAKKFEYKWDTDRLQNRE 63
          D   + EH +L ++ KK +++W  D  Q +E
Sbjct: 3  DIVGITEHKKLLSINKKKQFRWSGDSDQLKE 33


>SB_13243| Best HMM Match : COX17 (HMM E-Value=1.7)
          Length = 483

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 49  KFEYKWDTDRLQNREPNK 66
           +  Y+WD D  + +EPN+
Sbjct: 456 RLAYQWDVDMYEEQEPNR 473


>SB_9903| Best HMM Match : Lipase_GDSL (HMM E-Value=0.0051)
          Length = 891

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 33 DFDSLLEHLRLRNLAKKFEYKWDTDRLQNRE 63
          D   + EH +L ++ KK +++W  D  Q +E
Sbjct: 3  DIVGITEHKKLLSINKKKQFRWSGDSDQLKE 33


>SB_26745| Best HMM Match : ARID (HMM E-Value=4.4)
          Length = 218

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 33 DFDSLLEHLRLRNLAKKFEYKWDTDRLQNRE 63
          D   + EH +L ++ KK +++W  D  Q +E
Sbjct: 3  DIVGITEHKKLLSINKKKQFRWSGDSDQLKE 33


>SB_16869| Best HMM Match : Cytochrom_C_2 (HMM E-Value=4.5)
          Length = 182

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 33 DFDSLLEHLRLRNLAKKFEYKWDTDRLQNRE 63
          D   + EH +L ++ KK +++W  D  Q +E
Sbjct: 3  DIVGITEHKKLLSINKKKQFRWSGDSDQLKE 33


>SB_13850| Best HMM Match : WD40 (HMM E-Value=3.1e-06)
          Length = 229

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/12 (75%), Positives = 10/12 (83%)

Query: 11  GPGGQIIILPRN 22
           GPGGQI +LP N
Sbjct: 107 GPGGQIAVLPHN 118


>SB_5363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 297

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 49  KFEYKWDTDRLQNREPNK 66
           +  Y+WD D  + +EPN+
Sbjct: 270 RLAYQWDVDMYEEQEPNR 287


>SB_17140| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1236

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 49  KFEYKWDTDRLQNREPNKTPE 69
           +FE+  D DR QN E ++ PE
Sbjct: 135 RFEHTTDNDRNQNLEDSEQPE 155


>SB_55441| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 694

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 29  KEFRDFDSLLEHLRLRNLAKK 49
           K FRD DSL  H+R+ N  K+
Sbjct: 552 KSFRDKDSLNIHMRIHNNDKR 572


>SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2916

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 47  AKKFEYKWDTDRLQNREPNKTPES 70
           A+  EY+   DRLQ  + N+ PES
Sbjct: 691 AQLIEYQGIIDRLQGNKVNRPPES 714


>SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032)
          Length = 1293

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 47  AKKFEYKWDTDRLQNREPNKTPES 70
           A+  EY+   DRLQ  + N+ PES
Sbjct: 639 AQLIEYQGIIDRLQGNKVNRPPES 662


>SB_4473| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 564

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 27  EPKEFRDFDSLLEHLRLRNLAKKFEYKW 54
           EPKEF D D  ++  + R L  K    W
Sbjct: 186 EPKEFDDLDENMDFNQARTLLHKICRSW 213


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.138    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,100,790
Number of Sequences: 59808
Number of extensions: 107550
Number of successful extensions: 317
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 298
Number of HSP's gapped (non-prelim): 21
length of query: 76
length of database: 16,821,457
effective HSP length: 54
effective length of query: 22
effective length of database: 13,591,825
effective search space: 299020150
effective search space used: 299020150
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)