Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000284-TA|BGIBMGA000284-PA|undefined
(76 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L26081-1|AAA65938.1| 771|Homo sapiens semaphorin-III protein. 33 0.18
BC111416-1|AAI11417.1| 771|Homo sapiens sema domain, immunoglob... 33 0.18
AC006322-1|AAS02028.1| 287|Homo sapiens unknown protein. 33 0.18
BC059174-1|AAH59174.1| 625|Homo sapiens TRAF3IP1 protein protein. 28 5.3
AF242456-1|AAL90444.1| 691|Homo sapiens interleukin 13 receptor... 28 5.3
AF230877-1|AAF76984.1| 625|Homo sapiens MIP-T3 protein. 28 5.3
AC012485-2|AAX88977.1| 691|Homo sapiens unknown protein. 28 5.3
BX784396-2|CAI19414.1| 4387|Homo sapiens vacuolar protein sortin... 27 7.0
BX784395-2|CAI19412.1| 4387|Homo sapiens vacuolar protein sortin... 27 7.0
BX682532-2|CAI23591.1| 4387|Homo sapiens vacuolar protein sortin... 27 7.0
AL162331-1|CAB82724.1| 2270|Homo sapiens hypothetical protein pr... 27 7.0
AL109757-2|CAI22116.1| 4387|Homo sapiens vacuolar protein sortin... 27 7.0
AL031296-2|CAI23164.1| 4387|Homo sapiens vacuolar protein sortin... 27 7.0
AL031276-2|CAI19223.1| 4387|Homo sapiens vacuolar protein sortin... 27 7.0
AJ608775-1|CAE75587.1| 4363|Homo sapiens VPS13D-2A protein protein. 27 7.0
AJ608774-1|CAE75586.1| 4388|Homo sapiens VPS13D-1A protein protein. 27 7.0
>L26081-1|AAA65938.1| 771|Homo sapiens semaphorin-III protein.
Length = 771
Score = 32.7 bits (71), Expect = 0.18
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 11 GPGGQIIILPRNVHTDEPKEFRDFDSLLEHLRLRNLAKKFEYKWDTDRLQNRE-PNKTPE 69
G G + + ++ + +RDF L+ H L + + E W DR Q R+ P TP
Sbjct: 683 GDGSKTKEMSNSMTPSQKVWYRDFMQLINHPNLNTMDEFCEQVWKRDRKQRRQRPGHTPG 742
Query: 70 SFWNAKH 76
+ KH
Sbjct: 743 NSNKWKH 749
>BC111416-1|AAI11417.1| 771|Homo sapiens sema domain,
immunoglobulin domain (Ig), short basic domain,
secreted, (semapho protein.
Length = 771
Score = 32.7 bits (71), Expect = 0.18
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 11 GPGGQIIILPRNVHTDEPKEFRDFDSLLEHLRLRNLAKKFEYKWDTDRLQNRE-PNKTPE 69
G G + + ++ + +RDF L+ H L + + E W DR Q R+ P TP
Sbjct: 683 GDGSKTKEMSNSMTPSQKVWYRDFMQLINHPNLNTMDEFCEQVWKRDRKQRRQRPGHTPG 742
Query: 70 SFWNAKH 76
+ KH
Sbjct: 743 NSNKWKH 749
>AC006322-1|AAS02028.1| 287|Homo sapiens unknown protein.
Length = 287
Score = 32.7 bits (71), Expect = 0.18
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 11 GPGGQIIILPRNVHTDEPKEFRDFDSLLEHLRLRNLAKKFEYKWDTDRLQNRE-PNKTPE 69
G G + + ++ + +RDF L+ H L + + E W DR Q R+ P TP
Sbjct: 199 GDGSKTKEMSNSMTPSQKVWYRDFMQLINHPNLNTMDEFCEQVWKRDRKQRRQRPGHTPG 258
Query: 70 SFWNAKH 76
+ KH
Sbjct: 259 NSNKWKH 265
>BC059174-1|AAH59174.1| 625|Homo sapiens TRAF3IP1 protein protein.
Length = 625
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 42 RLRNLAKKFEYKWDTDRLQNREPNKTPE 69
R R K E+ WD DR +NRE +K PE
Sbjct: 277 RDRRRVKNGEHSWDLDREKNREHDK-PE 303
>AF242456-1|AAL90444.1| 691|Homo sapiens interleukin 13 receptor
alpha 1-binding protein-1 protein.
Length = 691
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 42 RLRNLAKKFEYKWDTDRLQNREPNKTPE 69
R R K E+ WD DR +NRE +K PE
Sbjct: 277 RDRRRVKNGEHSWDLDREKNREHDK-PE 303
>AF230877-1|AAF76984.1| 625|Homo sapiens MIP-T3 protein.
Length = 625
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 42 RLRNLAKKFEYKWDTDRLQNREPNKTPE 69
R R K E+ WD DR +NRE +K PE
Sbjct: 277 RDRRRVKNGEHSWDLDREKNREHDK-PE 303
>AC012485-2|AAX88977.1| 691|Homo sapiens unknown protein.
Length = 691
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 42 RLRNLAKKFEYKWDTDRLQNREPNKTPE 69
R R K E+ WD DR +NRE +K PE
Sbjct: 277 RDRRRVKNGEHSWDLDREKNREHDK-PE 303
>BX784396-2|CAI19414.1| 4387|Homo sapiens vacuolar protein sorting
13 homolog D (S. cerevisiae) protein.
Length = 4387
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 28 PKEFRDF----DSLLEHLRLRNLAKKFEYKWDTDRLQNRE 63
P++ +DF + LLE R + L + E KW DR Q E
Sbjct: 91 PEKIQDFNDEKEKLLERERKKALLQALEEKWKNDRQQKGE 130
>BX784395-2|CAI19412.1| 4387|Homo sapiens vacuolar protein sorting
13 homolog D (S. cerevisiae) protein.
Length = 4387
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 28 PKEFRDF----DSLLEHLRLRNLAKKFEYKWDTDRLQNRE 63
P++ +DF + LLE R + L + E KW DR Q E
Sbjct: 91 PEKIQDFNDEKEKLLERERKKALLQALEEKWKNDRQQKGE 130
>BX682532-2|CAI23591.1| 4387|Homo sapiens vacuolar protein sorting
13 homolog D (S. cerevisiae) protein.
Length = 4387
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 28 PKEFRDF----DSLLEHLRLRNLAKKFEYKWDTDRLQNRE 63
P++ +DF + LLE R + L + E KW DR Q E
Sbjct: 91 PEKIQDFNDEKEKLLERERKKALLQALEEKWKNDRQQKGE 130
>AL162331-1|CAB82724.1| 2270|Homo sapiens hypothetical protein
protein.
Length = 2270
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 28 PKEFRDF----DSLLEHLRLRNLAKKFEYKWDTDRLQNRE 63
P++ +DF + LLE R + L + E KW DR Q E
Sbjct: 91 PEKIQDFNDEKEKLLERERKKALLQALEEKWKNDRQQKGE 130
>AL109757-2|CAI22116.1| 4387|Homo sapiens vacuolar protein sorting
13 homolog D (S. cerevisiae) protein.
Length = 4387
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 28 PKEFRDF----DSLLEHLRLRNLAKKFEYKWDTDRLQNRE 63
P++ +DF + LLE R + L + E KW DR Q E
Sbjct: 91 PEKIQDFNDEKEKLLERERKKALLQALEEKWKNDRQQKGE 130
>AL031296-2|CAI23164.1| 4387|Homo sapiens vacuolar protein sorting
13 homolog D (S. cerevisiae) protein.
Length = 4387
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 28 PKEFRDF----DSLLEHLRLRNLAKKFEYKWDTDRLQNRE 63
P++ +DF + LLE R + L + E KW DR Q E
Sbjct: 91 PEKIQDFNDEKEKLLERERKKALLQALEEKWKNDRQQKGE 130
>AL031276-2|CAI19223.1| 4387|Homo sapiens vacuolar protein sorting
13 homolog D (S. cerevisiae) protein.
Length = 4387
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 28 PKEFRDF----DSLLEHLRLRNLAKKFEYKWDTDRLQNRE 63
P++ +DF + LLE R + L + E KW DR Q E
Sbjct: 91 PEKIQDFNDEKEKLLERERKKALLQALEEKWKNDRQQKGE 130
>AJ608775-1|CAE75587.1| 4363|Homo sapiens VPS13D-2A protein protein.
Length = 4363
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 28 PKEFRDF----DSLLEHLRLRNLAKKFEYKWDTDRLQNRE 63
P++ +DF + LLE R + L + E KW DR Q E
Sbjct: 91 PEKIQDFNDEKEKLLERERKKALLQALEEKWKNDRQQKGE 130
>AJ608774-1|CAE75586.1| 4388|Homo sapiens VPS13D-1A protein protein.
Length = 4388
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 28 PKEFRDF----DSLLEHLRLRNLAKKFEYKWDTDRLQNRE 63
P++ +DF + LLE R + L + E KW DR Q E
Sbjct: 91 PEKIQDFNDEKEKLLERERKKALLQALEEKWKNDRQQKGE 130
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.318 0.138 0.437
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,431,735
Number of Sequences: 224733
Number of extensions: 457728
Number of successful extensions: 969
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 962
Number of HSP's gapped (non-prelim): 16
length of query: 76
length of database: 73,234,838
effective HSP length: 55
effective length of query: 21
effective length of database: 60,874,523
effective search space: 1278364983
effective search space used: 1278364983
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)
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