GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000284-TA|BGIBMGA000284-PA|undefined
         (76 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1633 + 28392378-28393445                                         26   4.4  
02_02_0728 + 13416481-13416889,13416979-13417065,13417220-134173...    26   4.4  
11_06_0076 - 19830482-19831258,19837352-19837613,19838073-19838485     25   5.9  
01_05_0223 - 19467303-19467326,19467485-19467601,19468143-194682...    25   5.9  
04_04_0103 + 22808670-22810007                                         25   7.8  
03_06_0411 + 33741903-33742163,33742990-33743168,33743342-337434...    25   7.8  

>08_02_1633 + 28392378-28393445
          Length = 355

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 4/43 (9%)

Query: 35  DSLLEHLRLRNLAKKFEYKWDTDR---LQNREPNKTPESFWNA 74
           D  ++HL++ N     EY  D D      N  P  TP S W+A
Sbjct: 234 DDWMQHLQVHNTTTTLEYDDDHDHDHDCPNHPPLTTPRS-WDA 275


>02_02_0728 +
           13416481-13416889,13416979-13417065,13417220-13417351,
           13417474-13417539,13417754-13418919
          Length = 619

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 48  KKFEYKWDTDRLQNREPNKTPESFWNAK 75
           +K+E++ D D+  N EP +T    WN K
Sbjct: 215 EKYEFEMDADKGDNVEP-ETDNEEWNKK 241


>11_06_0076 -
          19830482-19831258,19837352-19837613,19838073-19838485
          Length = 483

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/37 (29%), Positives = 20/37 (54%)

Query: 16 IIILPRNVHTDEPKEFRDFDSLLEHLRLRNLAKKFEY 52
          ++ + R +HTD  KEF +  S+   +  +N+ K   Y
Sbjct: 61 VVAVKRYIHTDLRKEFMEEVSIHSKINHKNVVKFIGY 97


>01_05_0223 -
           19467303-19467326,19467485-19467601,19468143-19468256,
           19468575-19468697,19468846-19468935,19469765-19469890,
           19471942-19471995,19472068-19472142,19472222-19472329,
           19472556-19472627,19473375-19473545
          Length = 357

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 28  PKEFRDFDSLLEHLRLRNLAKKFEYKWDTDRLQNREPNKTP 68
           P     FD ++    L NLA  F+ + D D+LQNR  ++ P
Sbjct: 286 PLTLNAFDLIILSQGL-NLAALFDRRQDYDKLQNRFLSRKP 325


>04_04_0103 + 22808670-22810007
          Length = 445

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 5   GRDYTRGPGGQIIILPRNVHTDE 27
           G+D   G GG   + P  VH D+
Sbjct: 391 GKDVAAGAGGDGSVAPETVHVDD 413


>03_06_0411 +
           33741903-33742163,33742990-33743168,33743342-33743426,
           33743506-33743822,33743983-33744106,33744810-33744902,
           33745296-33745364,33745654-33745704,33745705-33745854,
           33745904-33746125,33746413-33746568,33746716-33746823,
           33746992-33747126,33747209-33747364,33747544-33747664,
           33748182-33748267
          Length = 770

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 8/19 (42%), Positives = 16/19 (84%)

Query: 15  QIIILPRNVHTDEPKEFRD 33
           +++ILPR++ +D P+E +D
Sbjct: 395 ELVILPRSILSDNPQEQQD 413


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.138    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,718,074
Number of Sequences: 37544
Number of extensions: 98133
Number of successful extensions: 195
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 191
Number of HSP's gapped (non-prelim): 6
length of query: 76
length of database: 14,793,348
effective HSP length: 55
effective length of query: 21
effective length of database: 12,728,428
effective search space: 267296988
effective search space used: 267296988
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)