GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000284-TA|BGIBMGA000284-PA|undefined
         (76 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61946-1|AAC24390.1|  575|Caenorhabditis elegans Hypothetical pr...    26   3.7  
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr...    25   4.8  
Z70210-3|CAA94150.1|  267|Caenorhabditis elegans Hypothetical pr...    25   6.4  
Z50029-8|CAA90342.2|  668|Caenorhabditis elegans Hypothetical pr...    25   6.4  
Z95392-2|CAK55178.1|  356|Caenorhabditis elegans Hypothetical pr...    25   8.5  
Z95392-1|CAB08740.1|  342|Caenorhabditis elegans Hypothetical pr...    25   8.5  
Z73098-14|CAK55194.1|  356|Caenorhabditis elegans Hypothetical p...    25   8.5  
Z66497-9|CAA91286.1|  457|Caenorhabditis elegans Hypothetical pr...    25   8.5  
AL132949-21|CAB61098.1|  866|Caenorhabditis elegans Hypothetical...    25   8.5  
AL023829-2|CAK55191.1|  356|Caenorhabditis elegans Hypothetical ...    25   8.5  
AL023829-1|CAA19471.1|  342|Caenorhabditis elegans Hypothetical ...    25   8.5  

>U61946-1|AAC24390.1|  575|Caenorhabditis elegans Hypothetical
          protein F47C12.4 protein.
          Length = 575

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 2  KTGGRDYTRGPG-----GQIIILPRNVHTDEPKEFRDFDSLLEHLRLRNLAKK 49
          K  G DYT+  G     G I ++  +V T + ++ RDF  L    RLR   ++
Sbjct: 37 KQSGGDYTQRAGNDSNTGDICLMKFSVVTSDEQDARDFCELNAPWRLREARRE 89


>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical
           protein F35A5.1 protein.
          Length = 1274

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 20  PRNVHTDEPKEFRDFDSLLEHLRLRNLAKKFEYKWDTDRLQNREPNKTPE 69
           PR+    +    ++ D ++    ++N AKK++  W+ D +   E  K PE
Sbjct: 182 PRDPSPKKAAPSKEHDPIVPPTPIKNPAKKWKPPWEDDEVPTEE-IKEPE 230


>Z70210-3|CAA94150.1|  267|Caenorhabditis elegans Hypothetical
          protein K08H2.3 protein.
          Length = 267

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%)

Query: 34 FDSLLEHLR---LRNLAKKFEYKWDTDRL 59
          + SL EH+R   +R + K  +Y WD D+L
Sbjct: 64 YSSLNEHMRDIKIRVIEKCGQYPWDFDKL 92


>Z50029-8|CAA90342.2|  668|Caenorhabditis elegans Hypothetical
          protein ZC504.3 protein.
          Length = 668

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 12/49 (24%), Positives = 24/49 (48%)

Query: 18 ILPRNVHTDEPKEFRDFDSLLEHLRLRNLAKKFEYKWDTDRLQNREPNK 66
          I PRN H  + + +RD +   +H R  +  ++ +     D   +R+ N+
Sbjct: 28 IQPRNSHKTKEERYRDKEKERDHERHHDRERRDDRYRKVDSRDHRDRNR 76


>Z95392-2|CAK55178.1|  356|Caenorhabditis elegans Hypothetical
           protein H27A22.1b protein.
          Length = 356

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 26  DEPKEFRDFDSLLEHLRLRNLAKKFEYKW--DTDRLQNREPNK 66
           D  + FRD+ +       R+LA+K+E KW   +  L N E +K
Sbjct: 187 DGEEAFRDWTATDSLYGSRHLAQKWEQKWYPSSSSLNNFELSK 229


>Z95392-1|CAB08740.1|  342|Caenorhabditis elegans Hypothetical
           protein H27A22.1a protein.
          Length = 342

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 26  DEPKEFRDFDSLLEHLRLRNLAKKFEYKW--DTDRLQNREPNK 66
           D  + FRD+ +       R+LA+K+E KW   +  L N E +K
Sbjct: 173 DGEEAFRDWTATDSLYGSRHLAQKWEQKWYPSSSSLNNFELSK 215


>Z73098-14|CAK55194.1|  356|Caenorhabditis elegans Hypothetical
           protein H27A22.1b protein.
          Length = 356

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 26  DEPKEFRDFDSLLEHLRLRNLAKKFEYKW--DTDRLQNREPNK 66
           D  + FRD+ +       R+LA+K+E KW   +  L N E +K
Sbjct: 187 DGEEAFRDWTATDSLYGSRHLAQKWEQKWYPSSSSLNNFELSK 229


>Z66497-9|CAA91286.1|  457|Caenorhabditis elegans Hypothetical
           protein K08F8.4 protein.
          Length = 457

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 9/37 (24%), Positives = 19/37 (51%)

Query: 27  EPKEFRDFDSLLEHLRLRNLAKKFEYKWDTDRLQNRE 63
           E ++ R  + ++EH + +   K     W+T   QN++
Sbjct: 80  EAEDHRKIEGVIEHFQQKAEKKVLVQDWNTKNKQNKD 116


>AL132949-21|CAB61098.1|  866|Caenorhabditis elegans Hypothetical
           protein Y53F4B.24 protein.
          Length = 866

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 41  LRLRNLAKKFEYKWDTDRLQNREPNKTP 68
           LR+  LAKKFE K    + +N E  ++P
Sbjct: 269 LRVAYLAKKFECKKSGKKSENSEKIRSP 296



 Score = 24.6 bits (51), Expect = 8.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 41  LRLRNLAKKFEYKWDTDRLQNREPNKTP 68
           LR+  LAKKFE K    + +N E  ++P
Sbjct: 786 LRVAYLAKKFECKKSGKKSENSEKIRSP 813


>AL023829-2|CAK55191.1|  356|Caenorhabditis elegans Hypothetical
           protein H27A22.1b protein.
          Length = 356

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 26  DEPKEFRDFDSLLEHLRLRNLAKKFEYKW--DTDRLQNREPNK 66
           D  + FRD+ +       R+LA+K+E KW   +  L N E +K
Sbjct: 187 DGEEAFRDWTATDSLYGSRHLAQKWEQKWYPSSSSLNNFELSK 229


>AL023829-1|CAA19471.1|  342|Caenorhabditis elegans Hypothetical
           protein H27A22.1a protein.
          Length = 342

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 26  DEPKEFRDFDSLLEHLRLRNLAKKFEYKW--DTDRLQNREPNK 66
           D  + FRD+ +       R+LA+K+E KW   +  L N E +K
Sbjct: 173 DGEEAFRDWTATDSLYGSRHLAQKWEQKWYPSSSSLNNFELSK 215


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.138    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,288,974
Number of Sequences: 27539
Number of extensions: 83983
Number of successful extensions: 165
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 158
Number of HSP's gapped (non-prelim): 14
length of query: 76
length of database: 12,573,161
effective HSP length: 56
effective length of query: 20
effective length of database: 11,030,977
effective search space: 220619540
effective search space used: 220619540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)