Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000284-TA|BGIBMGA000284-PA|undefined
(76 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051... 27 1.5
At1g27260.1 68414.m03321 paired amphipathic helix repeat-contain... 27 1.5
At1g73430.1 68414.m08500 sec34-like family protein contains Pfam... 26 3.5
At5g19610.1 68418.m02334 sec7 domain-containing protein similar ... 25 4.6
At3g50470.1 68416.m05520 hypersensitive response protein 3 (HR3)... 25 6.1
At5g51270.1 68418.m06356 protein kinase family protein contains ... 25 8.0
At5g07220.1 68418.m00823 BAG domain-containing protein contains ... 25 8.0
At3g58560.1 68416.m06527 endonuclease/exonuclease/phosphatase fa... 25 8.0
At2g36200.1 68415.m04444 kinesin motor protein-related 25 8.0
>At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178:
Krr1 family
Length = 638
Score = 27.1 bits (57), Expect = 1.5
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 33 DFDSLLEHLRLRNLAKKFEYKWDTDRLQNREPNKTPESFWNAKH 76
D L +++ L+ +A E W+ +R + +E + W KH
Sbjct: 526 DDAELNQYVPLKKMAPYVEKDWEVNRHKVKEQKRKIRELWEGKH 569
>At1g27260.1 68414.m03321 paired amphipathic helix
repeat-containing protein low similarity to
transcriptional repressor SIN3B [Mus musculus]
GI:2921547; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 222
Score = 27.1 bits (57), Expect = 1.5
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 17 IILPRNVHTDEPKEFRDFDSLLEHLRLRNLAK 48
II R+ DEP ++R F SLL R R + K
Sbjct: 8 IIAVRDRFRDEPAKYRQFLSLLRDRRARRIDK 39
>At1g73430.1 68414.m08500 sec34-like family protein contains Pfam
PF04136: Sec34-like family profile; similar to Conserved
oligomeric Golgi complex component 3 (Vesicle docking
protein SEC34 homolog) (p94) (Swiss-Prot:Q96JB2) [Homo
sapiens]
Length = 784
Score = 25.8 bits (54), Expect = 3.5
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 18 ILPRNVHTDEPKEFRDFDSLLEHLR--LRNLAKKFEYKWDTDRLQNREPNKTPESFWNAK 75
I P ++ + DF LLEHLR LR A F++ T + P + ES +AK
Sbjct: 576 IAPFDIEFSVTHKELDFSHLLEHLRRILRGQASLFDWSRSTSLARTLSP-RVLESQIDAK 634
>At5g19610.1 68418.m02334 sec7 domain-containing protein similar to
SP|Q42510 Pattern formation protein EMB30 (GNOM)
{Arabidopsis thaliana}; contains Pfam profile PF01369:
Sec7 domain
Length = 1375
Score = 25.4 bits (53), Expect = 4.6
Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
Query: 26 DEPKEFRDFDSLLEHLRLRNLAKK 49
D+PKE DF++ ++H+R+R K+
Sbjct: 474 DKPKE--DFETWVDHIRVRKAQKR 495
>At3g50470.1 68416.m05520 hypersensitive response protein 3 (HR3)
identical to HR3 [Arabidopsis thaliana GI:12958164;
contains Pfam profile PF05659: Arabidopsis
broad-spectrum mildew resistance protein RPW8
Length = 213
Score = 25.0 bits (52), Expect = 6.1
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 20 PRNVHTDEPKEFRDFDSLLE---HLRLRNLAKKFEYK 53
PR V D SL+E LR RNL KKF YK
Sbjct: 65 PRKVIEDLKHLLEKAVSLVEAYAELRRRNLLKKFRYK 101
>At5g51270.1 68418.m06356 protein kinase family protein contains
Pfam profile: PF00069 Eukaryotic protein kinase domain
Length = 819
Score = 24.6 bits (51), Expect = 8.0
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 36 SLLEHLRLRNLAKKFEYKWDTDRLQNREPNKTPESFWNAKH 76
+LLEH + +AKK K++ R + RE + E+ A H
Sbjct: 386 TLLEH-ETKGIAKKETEKFEQKRREEREAAQRREAEMKATH 425
>At5g07220.1 68418.m00823 BAG domain-containing protein contains
Pfam:PF02179 BAG domain
Length = 303
Score = 24.6 bits (51), Expect = 8.0
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 3 TGGRDYTRGPGGQIIILPRNVHTDEPKEFR 32
T G ++ PGG ++ + ++D P+ FR
Sbjct: 17 TSGNEWESRPGGMVVQRRTDQNSDVPRVFR 46
>At3g58560.1 68416.m06527 endonuclease/exonuclease/phosphatase
family protein similar to SP|P31384 Glucose-repressible
alcohol dehydrogenase transcriptional effector (Carbon
catabolite repressor protein 4) {Saccharomyces
cerevisiae}; contains Pfam profile PF03372:
Endonuclease/Exonuclease/phosphatase family
Length = 602
Score = 24.6 bits (51), Expect = 8.0
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 5 GRDYTRGPGGQIIILPRNVHTDEPKEFRDFDSLLEHLRLRNLAK 48
G PG + ++ N H + P E +D H L+ L K
Sbjct: 399 GSQAADNPGKRQLLCVANTHVNVPHELKDVKLWQVHTLLKGLEK 442
>At2g36200.1 68415.m04444 kinesin motor protein-related
Length = 1056
Score = 24.6 bits (51), Expect = 8.0
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 39 EHLR-LRNLAKKFEYKWDTDRLQNREPNKTPESFWNAKH 76
EH+ + NL K + KW+T +Q + F AKH
Sbjct: 775 EHVSAVNNLTKDAKRKWETFSMQAENEAREGADFSAAKH 813
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.138 0.437
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,161,689
Number of Sequences: 28952
Number of extensions: 78325
Number of successful extensions: 146
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 142
Number of HSP's gapped (non-prelim): 9
length of query: 76
length of database: 12,070,560
effective HSP length: 56
effective length of query: 20
effective length of database: 10,449,248
effective search space: 208984960
effective search space used: 208984960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)
- SilkBase 1999-2023 -