Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000283-TA|BGIBMGA000283-PA|IPR000618|Insect cuticle
protein
         (204 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    23   1.3  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   3.0  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   3.0  
AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    21   6.9  

>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)

Query: 74  DDEVKGEYWLIQP 86
           DD  KG YW++ P
Sbjct: 149 DDPGKGNYWMLDP 161


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 6/16 (37%), Positives = 10/16 (62%)

Query: 115 HIDEEKKSHHIPHYPE 130
           H+ E+   HH PH+ +
Sbjct: 170 HMQEQHPQHHQPHHQQ 185


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 6/16 (37%), Positives = 10/16 (62%)

Query: 115 HIDEEKKSHHIPHYPE 130
           H+ E+   HH PH+ +
Sbjct: 172 HMQEQHPQHHQPHHQQ 187


>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock
          protein 70 protein.
          Length = 195

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 8/12 (66%), Positives = 10/12 (83%)

Query: 30 RHKKIINADKKS 41
          +HKK I ADKK+
Sbjct: 75 KHKKDIRADKKA 86


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.134    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,273
Number of Sequences: 317
Number of extensions: 2207
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 204
length of database: 114,650
effective HSP length: 54
effective length of query: 150
effective length of database: 97,532
effective search space: 14629800
effective search space used: 14629800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 41 (20.6 bits)