Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000283-TA|BGIBMGA000283-PA|IPR000618|Insect cuticle
protein
         (204 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56834| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.38 
SB_21450| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.38 
SB_37671| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.88 
SB_11628| Best HMM Match : DUF1014 (HMM E-Value=0.64)                  30   1.2  
SB_23704| Best HMM Match : Utp14 (HMM E-Value=2.1e-10)                 30   1.2  
SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07)                    30   1.5  
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)    30   1.5  
SB_39886| Best HMM Match : PH (HMM E-Value=0.0007)                     29   2.0  
SB_32857| Best HMM Match : TolA (HMM E-Value=1.1)                      29   2.0  
SB_43091| Best HMM Match : DUF1059 (HMM E-Value=2.8)                   29   2.7  
SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_647| Best HMM Match : Fork_head (HMM E-Value=3.5e-21)               28   4.7  
SB_55227| Best HMM Match : Ank (HMM E-Value=1.9e-30)                   28   4.7  
SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_20922| Best HMM Match : RVT_1 (HMM E-Value=0)                       27   8.2  
SB_13460| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_56834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 552

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 23/110 (20%), Positives = 46/110 (41%), Gaps = 1/110 (0%)

Query: 10  SIAVCVLGGGHATSEQKVVVRHKKIINADKKSDEYAWSYPSYEFSYKVHDPHTHDKKGQS 69
           ++AV    GG +T  ++   R + ++N D    +Y+    +   S + +D    D++ + 
Sbjct: 338 AVAVSSEAGGSSTRRRQPA-RPEVVVNGDAAPHQYSTRRRARLVSEETNDDEDEDEEEEE 396

Query: 70  ENREDDEVKGEYWLIQPDGHKRIVSYHGDKKSGFNADVKYSEPHKHIDEE 119
           E   +DE  GE      D          D +     D   SE  ++++E+
Sbjct: 397 EEENEDEENGEDEENGEDEENEENGEDDDDEEEEEEDSDESEESEYLEEQ 446


>SB_21450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 4/96 (4%)

Query: 36  NADKKSDEYAWS-YPSYEFSYKVHDPHTHDKKGQSENREDDEVKGEYWLIQPDGHKRIVS 94
           N++    E+  S + + E     HD   HD     ++  DD    E+   + D  K   S
Sbjct: 4   NSEHDDSEHDDSEHDNSEHDNSEHDDSEHDDSEHDDSEHDDHDDSEHDDSKHDNSKHDDS 63

Query: 95  YHGDKKSGFNA-DVKYSEPHKHIDEEKKSHH--IPH 127
            H D +  +N  D    +  +H D E ++ +  +PH
Sbjct: 64  KHDDSEHNYNEHDDSEHDDSEHDDSEHETSYLLLPH 99



 Score = 27.5 bits (58), Expect = 8.2
 Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 4/99 (4%)

Query: 38  DKKSDEYAWSYPSYEFSYKVHDPHTHDKKGQSENREDDEVKGEYWLIQPDGHKRIVSYHG 97
           D  S+     +   E     HD   HD     ++  DD    ++   + D  K   S H 
Sbjct: 2   DSNSEHDDSEHDDSEHDNSEHDNSEHDDSEHDDSEHDDSEHDDHDDSEHDDSKHDNSKHD 61

Query: 98  DKKSGFNADVKYSE--PHKHID-EEKKSHHIPHYPEVEH 133
           D K   +++  Y+E    +H D E   S H   Y  + H
Sbjct: 62  DSKHD-DSEHNYNEHDDSEHDDSEHDDSEHETSYLLLPH 99


>SB_37671| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 6   VILLSIAVCVLGGGHATSEQKVVVRHKKIINADKKSDEYAWSYPSYEFSYKVHDPHTHDK 65
           VI L ++   L  GH  SE +    H++    D + D+ A  +   +  +   D H  DK
Sbjct: 347 VISLVVSEDKLPPGH--SEDEYDKEHEEASKDDHQDDKEAEHHDDKDEQHDDKDEHRDDK 404

Query: 66  KGQSENREDDEVKGE 80
               +  E DE KG+
Sbjct: 405 DDHHDEDEHDEKKGD 419



 Score = 27.9 bits (59), Expect = 6.2
 Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 4/92 (4%)

Query: 34  IINADKKSDEYAWSYPSYEFSYKVHDPHTHDKKGQSENREDDEV--KGEYWLIQPDGHKR 91
           +++ DK    ++      E      D H  DK+ +  + +D++   K E+   + D H  
Sbjct: 351 VVSEDKLPPGHSEDEYDKEHEEASKDDHQDDKEAEHHDDKDEQHDDKDEHRDDKDDHHDE 410

Query: 92  IVSYHGDKKSGFNADVKYSEPHKHIDEEKKSH 123
               H +KK   + D  + +  K +D+++  H
Sbjct: 411 --DEHDEKKGDDHEDDDHHDDKKDVDDDEGDH 440


>SB_11628| Best HMM Match : DUF1014 (HMM E-Value=0.64)
          Length = 423

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 60  PHTHDKKGQSENREDDEVKGEYWLIQPDGHKRIVSYHGDKKSGFNADVKYSEPHKHIDEE 119
           P    KK Q++N+ED+E K E      DG K   + H + K G   + +     K   +E
Sbjct: 55  PKVRSKKRQNKNKEDEEKKKENTESDGDGEK---TEHDENKEGEKVECEECCRKKKEQQE 111

Query: 120 KKSH 123
            K +
Sbjct: 112 AKEN 115


>SB_23704| Best HMM Match : Utp14 (HMM E-Value=2.1e-10)
          Length = 574

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 57  VHDPHTHDKKGQ---SENREDDEVKGEYWLIQPDGHKRIVSYHGDKKSGFNADVKYSEPH 113
           + D +  D +G+   SE  +DD+   E  L +P+   +  +  G KK+  +A  +   P+
Sbjct: 330 IKDENNRDIEGEGDSSEGEKDDDDDFELQLAKPEPEGKKGTKRGKKKTSKDATEESEAPN 389

Query: 114 KHIDEEKK 121
           K   E+KK
Sbjct: 390 KKRKEKKK 397


>SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07)
          Length = 844

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/46 (32%), Positives = 22/46 (47%)

Query: 28  VVRHKKIINADKKSDEYAWSYPSYEFSYKVHDPHTHDKKGQSENRE 73
           V++H K     K   +Y   +PSYE +    +    D  GQSE +E
Sbjct: 606 VMKHVKARKHQKNYRQYVIDHPSYEANQIKRNKELSDMLGQSEGQE 651


>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
          Length = 4160

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/40 (30%), Positives = 27/40 (67%)

Query: 13   VCVLGGGHATSEQKVVVRHKKIINADKKSDEYAWSYPSYE 52
            VC+L    AT+++K   + K++++A+KKS ++  ++ + E
Sbjct: 2716 VCLLTSSLATAQEKQERQQKELLDANKKSSDHEIAFKNME 2755


>SB_39886| Best HMM Match : PH (HMM E-Value=0.0007)
          Length = 597

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 63  HDKKGQSENREDDEVKG-EYWLIQPDGHKRIVSYHGD 98
           H  +   +  + + V+G + ++I+PDG K +  YHGD
Sbjct: 430 HASRRDMDTTDSNAVEGTQSFIIRPDGDKILYPYHGD 466


>SB_32857| Best HMM Match : TolA (HMM E-Value=1.1)
          Length = 448

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 52  EFSYKVHDPHTHDKKGQSENREDDEVKGEYWLIQPDGHKRIV--SYHGDKKSGFNADV 107
           E + K  D H  ++  + E+R D+E   E      D  + IV  SYHG   S + A+V
Sbjct: 231 ERNNKDEDRHDEERNNEDEDRHDEERNNEDEDRHDDEERDIVADSYHGMSFSDYLAEV 288


>SB_43091| Best HMM Match : DUF1059 (HMM E-Value=2.8)
          Length = 291

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 106 DVKYSEPHKHIDEEKKSHHIPHY 128
           DV   +P  H+ + K  HHIP Y
Sbjct: 159 DVPDKKPEHHVPDNKPEHHIPDY 181


>SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2496

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 20   HATSEQKVVVRHKKIINADKKSDEYAWSYPSYEFSYKVHDPH--THDKKGQSENRE 73
            + T +++ V   K+ +  DK+   +   Y +++  Y  HD    THDK+  + ++E
Sbjct: 1715 YVTHDKEYVTHDKEYVTHDKEYVTHDKEYVTHDKEYVTHDKEYVTHDKEYVTHDKE 1770



 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 20   HATSEQKVVVRHKKIINADKKSDEYAWSYPSYEFSYKVHDPH--THDKKGQSENRE 73
            + T + + V   K+ +  DK+   +   Y +++  Y  HD    THDK+  + ++E
Sbjct: 1708 YVTHDNEYVTHDKEYVTHDKEYVTHDKEYVTHDKEYVTHDKEYVTHDKEYVTHDKE 1763


>SB_647| Best HMM Match : Fork_head (HMM E-Value=3.5e-21)
          Length = 491

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 61  HTHDKKGQSENREDD-EVKGEYWLIQPDGHKRIV 93
           +T  KK   E R  D   KG YW I P+G + I+
Sbjct: 97  YTKCKKAWKEKRPADLPGKGSYWSISPEGKENIM 130


>SB_55227| Best HMM Match : Ank (HMM E-Value=1.9e-30)
          Length = 662

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/80 (21%), Positives = 35/80 (43%)

Query: 8   LLSIAVCVLGGGHATSEQKVVVRHKKIINADKKSDEYAWSYPSYEFSYKVHDPHTHDKKG 67
           ++S A  +     + ++QK    + + +N  +  +     +   E S +V  P T DK+G
Sbjct: 393 VISTATVMSSSTVSDNQQKEHASNSRDLNCAEVINPNGELFEEDEVSEQVKSPSTQDKEG 452

Query: 68  QSENREDDEVKGEYWLIQPD 87
           + E  +  E  G   + + D
Sbjct: 453 EKEMHKGREASGRTIITRQD 472


>SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1967

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/21 (47%), Positives = 16/21 (76%)

Query: 60  PHTHDKKGQSENREDDEVKGE 80
           P T D+KG+ EN++  E++GE
Sbjct: 141 PFTEDEKGKDENKDCMEIEGE 161


>SB_20922| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 576

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 90  KRIVSYHGDKKSGFNADVKY---SEPHKHIDEEKKSHHIPHYPEVEHKN 135
           K  V YH DK  G +A+ K+   +E ++ + +E K      + E   KN
Sbjct: 48  KMAVKYHPDKNKGKDAEEKFREVAEAYEVLSDENKRRQYDQFGEEGLKN 96


>SB_13460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 170 VNLGEYEPLPYRAPVVHKIRENYHHPHYYR 199
           V L  Y   PY  PVV++   +Y H  YYR
Sbjct: 42  VKLSVYVTSPY-FPVVYRSNRHYRHYRYYR 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.134    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,201,067
Number of Sequences: 59808
Number of extensions: 300132
Number of successful extensions: 615
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 592
Number of HSP's gapped (non-prelim): 28
length of query: 204
length of database: 16,821,457
effective HSP length: 79
effective length of query: 125
effective length of database: 12,096,625
effective search space: 1512078125
effective search space used: 1512078125
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 58 (27.5 bits)