Silkworm BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000283-TA|BGIBMGA000283-PA|IPR000618|Insect cuticle
protein
         (204 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64599-4|AAB04562.1|  429|Caenorhabditis elegans Unidentified vi...    36   0.020
AF040661-16|AAG24218.1|  318|Caenorhabditis elegans Hypothetical...    29   3.1  
Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U21317-8|AAA62528.1|  267|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr...    27   7.1  
AF016427-11|AAB65354.2|  108|Caenorhabditis elegans Hypothetical...    27   7.1  

>U64599-4|AAB04562.1|  429|Caenorhabditis elegans Unidentified
           vitellogenin-linkedtranscript protein 5, isoform a
           protein.
          Length = 429

 Score = 35.9 bits (79), Expect = 0.020
 Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 10/112 (8%)

Query: 18  GGHATSEQKVVVRHKKIINADKKSDEYAWSYPSYEFSYKVHDPHTHDKKGQSENREDDEV 77
           G H    QK+   H   +N   +++E+A  +PS+  + + H  H+ D       R+D  V
Sbjct: 228 GEHFQQWQKIYHAH---VNHTSRTNEHAAVFPSHHHTPE-HRSHSADHP--KIERKDSIV 281

Query: 78  K--GEYWLIQPDGHKRIVSYHGDKKSGFNADVKYSEPHKHIDEEKKSHHIPH 127
           +  G + +        + SY  D  +  +   + +EPHKH  + ++ H +PH
Sbjct: 282 REIGNFVMHVVQSVNILPSYDTDANTSDSH--RNNEPHKHDQQREEHHELPH 331


>AF040661-16|AAG24218.1|  318|Caenorhabditis elegans Hypothetical
           protein W10G11.11 protein.
          Length = 318

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/54 (33%), Positives = 23/54 (42%)

Query: 41  SDEYAWSYPSYEFSYKVHDPHTHDKKGQSENREDDEVKGEYWLIQPDGHKRIVS 94
           +D  A+ YP     YK+  P   DKK +S      E  G   L+  DG   I S
Sbjct: 163 NDPDAYKYPGVRGCYKIVLPFKEDKKWESGMLSYPEAVGNCTLLGGDGLMTIPS 216


>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 64  DKKGQSENREDDEVKGEYWLIQPDGHKRIVSYHGDKKSGFNADVKYSEPHKHIDEEKKSH 123
           +KK + E +E+DE K E    + +  +       +KK     + K  EP K  +EEKK  
Sbjct: 298 EKKEEVEKKEEDEKKDEEPKKEEEKKEEEQKEEVEKKE--EEEKKDEEPKK--EEEKKEE 353

Query: 124 HIPHYPEVEHKN 135
                 EVE K+
Sbjct: 354 EEKKEDEVEEKS 365


>U21317-8|AAA62528.1|  267|Caenorhabditis elegans Hypothetical
          protein B0495.9 protein.
          Length = 267

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 61 HTHDKKGQSENREDDEVKGEYWLI-QPDGHKRI 92
          HT DK+ +++N  +D  KGE     Q DG K+I
Sbjct: 59 HTDDKQEKNQNEGEDNQKGENKTTDQQDGPKKI 91


>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical
           protein F36F2.3a protein.
          Length = 1128

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 7/95 (7%)

Query: 26  KVVVRHKKIINADKKSDEYAWSYPSYEFSYKVHDPHTHDKKGQSENREDDEVKGEYWLIQ 85
           K + +HKK     K   +        E   K H  H  +KK + E R++DE   +    +
Sbjct: 765 KKMKKHKKSKKNKKHHRKEEDGDEDEERKRKKHKKHKKEKKSKKEKRDEDEDDLD---TE 821

Query: 86  PDGHKRIVSYHGDKKSGFNADVKYSEPHKHIDEEK 120
               K+   Y  DK    + D    EP    DE+K
Sbjct: 822 KKEKKKERKYQDDK----DEDSNRKEPRSLDDEDK 852


>AF016427-11|AAB65354.2|  108|Caenorhabditis elegans Hypothetical
           protein F32D1.8 protein.
          Length = 108

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 29  VRHKKIINADKKSDEYAWSYPSYEFSY 55
           +R  K +     SDE  WS  S+EF+Y
Sbjct: 77  IRRGKTLEEQSDSDEEEWSDDSWEFAY 103


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.315    0.134    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,293,364
Number of Sequences: 27539
Number of extensions: 221948
Number of successful extensions: 436
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 433
Number of HSP's gapped (non-prelim): 7
length of query: 204
length of database: 12,573,161
effective HSP length: 78
effective length of query: 126
effective length of database: 10,425,119
effective search space: 1313564994
effective search space used: 1313564994
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 57 (27.1 bits)