GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000283-TA|BGIBMGA000283-PA|IPR000618|Insect cuticle
protein
         (204 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0271 - 16382655-16384451                                         30   1.1  
10_08_0270 + 16378878-16380566                                         30   1.1  
02_04_0480 - 23274945-23275196,23275558-23275623,23276709-232768...    29   2.0  
10_01_0330 + 3614562-3614574,3614676-3615118,3617700-3617825,361...    28   4.6  
08_02_0550 + 18509365-18509589,18509668-18510644,18510828-185118...    28   4.6  
07_03_1784 - 29492511-29492804,29492913-29492999,29493076-294932...    28   4.6  
03_06_0755 - 36029836-36030123,36030352-36030444,36030601-360306...    28   6.1  
12_02_1178 + 26718283-26719368                                         27   8.0  

>10_08_0271 - 16382655-16384451
          Length = 598

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38  DKKSDEYAWSYPSYEFSYKVHDPHTHD 64
           ++K + Y+W YP      KV DPH  D
Sbjct: 566 EEKLEMYSWKYPLLREGQKVEDPHEWD 592


>10_08_0270 + 16378878-16380566
          Length = 562

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38  DKKSDEYAWSYPSYEFSYKVHDPHTHD 64
           ++K + Y+W YP      KV DPH  D
Sbjct: 530 EEKLEMYSWKYPLLREGQKVEDPHEWD 556


>02_04_0480 -
           23274945-23275196,23275558-23275623,23276709-23276851,
           23276947-23277063,23277219-23278683,23279561-23280730
          Length = 1070

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/47 (27%), Positives = 24/47 (51%)

Query: 30  RHKKIINADKKSDEYAWSYPSYEFSYKVHDPHTHDKKGQSENREDDE 76
           R KK++N DKK+     + P +E   K+    T ++ G+   + D +
Sbjct: 204 RGKKLLNGDKKAKSRKVTTPFFEKMRKIKMQRTSNQNGEKNMKSDGD 250


>10_01_0330 +
           3614562-3614574,3614676-3615118,3617700-3617825,
           3618379-3618786,3618871-3619311,3619399-3619779
          Length = 603

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 68  QSENREDDEVKGEYWLIQPDGHKRIVSY--HGDKKSGFNADVKYSEPHKHIDEEKKSHHI 125
           ++EN  D     +  LIQ    +R   +  HG+++SG  A V  S  H   DE++    I
Sbjct: 54  KNENMFDSREDVQGHLIQRGFMERYTCWVKHGEQESGSGAAVDRSGAHNQEDEDEHDMFI 113

Query: 126 P 126
           P
Sbjct: 114 P 114


>08_02_0550 +
           18509365-18509589,18509668-18510644,18510828-18511802,
           18511885-18512142,18512216-18512326,18512418-18512496,
           18512595-18512687,18512773-18512958
          Length = 967

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 110 SEPHKHIDEEKKSHHIPHYPEVE 132
           ++P KH DE + +H +P  PE E
Sbjct: 531 NQPEKHADEPELAHPMPEQPEPE 553


>07_03_1784 -
           29492511-29492804,29492913-29492999,29493076-29493222,
           29493522-29493690,29493777-29494015,29494111-29494356,
           29494419-29495084
          Length = 615

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 4/78 (5%)

Query: 41  SDEYAWSYPSYEFSYKVHDPHTHDKKGQSENREDDE--VKGEYWLIQ--PDGHKRIVSYH 96
           +D+ AW     +   ++H    HD++   ++ ++DE   + E  + Q     +K +++  
Sbjct: 283 TDDAAWGKEVPDIHSQIHSATKHDQREDDDDTDEDEDDEEEEQKMQQHLAPQYKHLITIK 342

Query: 97  GDKKSGFNADVKYSEPHK 114
             K  G   D   S+P K
Sbjct: 343 AGKPKGTLLDALQSDPEK 360


>03_06_0755 -
           36029836-36030123,36030352-36030444,36030601-36030676,
           36030755-36030880,36030957-36031013,36031132-36031253
          Length = 253

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 5/49 (10%)

Query: 80  EYWLIQPDGHKRIVSYHGDKKSGFNADVKYSEPHKHIDEEKKSHHIPHY 128
           E+W   P G+K IV Y    +SGF   + ++   K +     + +I H+
Sbjct: 164 EFWF--PPGNKSIVQYRSASRSGF---IDFNANKKRVKARTHAPNIDHF 207


>12_02_1178 + 26718283-26719368
          Length = 361

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 82  WLIQPDGHKRIVSYHGDKKSG-FNADVKYSEPHKH 115
           + + PDGH   VS  GD   G +  D K  E  +H
Sbjct: 180 YAVHPDGHTVFVSTSGDGGGGTYTVDTKRGEWRRH 214


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.134    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,061,106
Number of Sequences: 37544
Number of extensions: 241653
Number of successful extensions: 456
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 451
Number of HSP's gapped (non-prelim): 9
length of query: 204
length of database: 14,793,348
effective HSP length: 79
effective length of query: 125
effective length of database: 11,827,372
effective search space: 1478421500
effective search space used: 1478421500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 58 (27.5 bits)