GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000283-TA|BGIBMGA000283-PA|IPR000618|Insect cuticle
protein
         (204 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    28   0.054
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    28   0.054
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    28   0.054
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   3.6  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 28.3 bits (60), Expect = 0.054
 Identities = 11/20 (55%), Positives = 12/20 (60%)

Query: 52  EFSYKVHDPHTHDKKGQSEN 71
           E  +KVHDP  H K G  EN
Sbjct: 350 EVRFKVHDPKAHSKGGTLEN 369


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 28.3 bits (60), Expect = 0.054
 Identities = 11/20 (55%), Positives = 12/20 (60%)

Query: 52  EFSYKVHDPHTHDKKGQSEN 71
           E  +KVHDP  H K G  EN
Sbjct: 350 EVRFKVHDPKAHSKGGTLEN 369


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 28.3 bits (60), Expect = 0.054
 Identities = 11/23 (47%), Positives = 12/23 (52%)

Query: 49  PSYEFSYKVHDPHTHDKKGQSEN 71
           P     +KVHDP  H K G  EN
Sbjct: 285 PKQTVRFKVHDPKAHSKGGTLEN 307


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 18   GGHATSEQKVVVRHKKIINADKKSDEYAWSY---PSYEFSYKVHDPHTHDKKGQSENRED 74
            G +   ++  +V   + +   + S   A SY   P     YKV + H    + + + + D
Sbjct: 1038 GKYRNYDRDSLVEAVRAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLMRPRKRDQKQSD 1097

Query: 75   DEVK 78
            D+ K
Sbjct: 1098 DKTK 1101


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.134    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,241
Number of Sequences: 429
Number of extensions: 2602
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 204
length of database: 140,377
effective HSP length: 55
effective length of query: 149
effective length of database: 116,782
effective search space: 17400518
effective search space used: 17400518
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 42 (21.0 bits)