GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000283-TA|BGIBMGA000283-PA|IPR000618|Insect cuticle
protein
         (204 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g59453.1 68414.m06679 transcription factor-related weak simil...    31   0.55 
At1g25400.1 68414.m03153 expressed protein similar to unknown pr...    30   0.95 
At5g17930.1 68418.m02102 MA3 domain-containing protein low simil...    29   2.9  
At3g29075.1 68416.m03637 glycine-rich protein                          29   2.9  
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp...    28   3.9  
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp...    28   3.9  
At1g54410.1 68414.m06207 dehydrin family protein contains Pfam d...    28   3.9  
At5g08450.2 68418.m00996 expressed protein KED, Nicotiana tabacu...    28   5.1  
At5g08450.1 68418.m00995 expressed protein KED, Nicotiana tabacu...    28   5.1  
At2g34880.1 68415.m04282 transcription factor jumonji (jmj) fami...    28   5.1  
At5g27650.1 68418.m03313 PWWP domain-containing protein hypothet...    27   6.7  
At5g05210.1 68418.m00555 nucleolar matrix protein-related contai...    27   6.7  

>At1g59453.1 68414.m06679 transcription factor-related weak
           similarity to TFIIIC Box B-binding subunit [Homo
           sapiens] GI:442362
          Length = 1729

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 5/68 (7%)

Query: 32  KKIINADKKSDEYAWSYPSYEFSYKVHDPHTHDKKGQSENREDDEVKGEYWLIQPDGHKR 91
           +K++NA K S +   S  S     KV  PH   +  + E+R  + +K E ++++ + HK 
Sbjct: 472 EKVVNAAKGSPDLPKSAKS-----KVQQPHATIENSRREHRILERLKEEKFVLRVEFHKW 526

Query: 92  IVSYHGDK 99
           ++++  D+
Sbjct: 527 LLTFEKDR 534


>At1g25400.1 68414.m03153 expressed protein similar to unknown
           protein GI:6714347 from [Arabidopsis thaliana]
          Length = 288

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 7/88 (7%)

Query: 22  TSEQKVVVRHKKIINADKKSDEYAWSYPSYEFSYKVHDPHTHDKKGQSENREDDEVKGEY 81
           T+  K +V   + +N    S     +Y S +  +      + ++K + +N+EDD V G+ 
Sbjct: 62  TTRIKTLVFRLRNVNVSLPSQTLLCNYDS-DSDWSFSSDSSDEEKDEDDNKEDDSVNGDS 120

Query: 82  WLIQPDGHKRIVSYHGDKKSGFNADVKY 109
             +Q  G+     YH D   G +  V +
Sbjct: 121 -RVQRFGY-----YHDDDDKGISGSVPW 142


>At5g17930.1 68418.m02102 MA3 domain-containing protein low
           similarity to SP|Q9P6R9 Cell cycle control protein cwf22
           {Schizosaccharomyces pombe}; contains Pfam profile
           PF02847: MA3 domain
          Length = 707

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 7/96 (7%)

Query: 33  KIINADKKSDEYAWS-YPSYEFSYKVHDPHTHDKKGQSENREDDEVKGEYWLIQPDGHKR 91
           ++ N D + +E  +S   S E      D   H KK +S    D+E++ +   I  DG   
Sbjct: 177 ELANEDLEHEESEFSDEESEEEPVGKRDRKRHKKKKKSV---DEELESDLMNITDDGESE 233

Query: 92  IVSYHGDKKSGFNADVKYSEPHKHIDEEKKSHHIPH 127
            V+YH    S    D      H+   E    +  PH
Sbjct: 234 TVNYHDSPSSLEKVDTPL---HERKPESSSKYVAPH 266


>At3g29075.1 68416.m03637 glycine-rich protein 
          Length = 294

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 4/77 (5%)

Query: 52  EFSYKVHDPHTHDKKGQSENREDDEVKGEYWLIQPDGHKRIVSY--HGDKKSGFNAD--V 107
           E S K       DKK    N EDDE K +    Q   H     Y     KK  +N D   
Sbjct: 159 EKSKKKEKEKKKDKKKDGNNSEDDEFKKKKKKEQYKEHHDDDDYDEKKKKKKDYNDDDEK 218

Query: 108 KYSEPHKHIDEEKKSHH 124
           K  + +   D+EKK  H
Sbjct: 219 KKKKHYNDDDDEKKKKH 235


>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam domain PF01805:
           Surp module
          Length = 844

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 3/74 (4%)

Query: 52  EFSYKVHDPHTHDKKG-QSENREDDEVKGEYWLIQPDGHKRIVSYHGDKKSGFNADVKYS 110
           E+  +    H H K   + E  +  + +GE+   +   H + V Y  DK+S  +   K+ 
Sbjct: 687 EYHSRSRHRHRHSKSSDRHELYDSSDNEGEH-RHRSSKHSKDVDYSKDKRSHHHRSRKH- 744

Query: 111 EPHKHIDEEKKSHH 124
           E H+   +++  HH
Sbjct: 745 EKHRDSSDDEHHHH 758


>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam domain PF01805:
           Surp module
          Length = 843

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 3/74 (4%)

Query: 52  EFSYKVHDPHTHDKKG-QSENREDDEVKGEYWLIQPDGHKRIVSYHGDKKSGFNADVKYS 110
           E+  +    H H K   + E  +  + +GE+   +   H + V Y  DK+S  +   K+ 
Sbjct: 687 EYHSRSRHRHRHSKSSDRHELYDSSDNEGEH-RHRSSKHSKDVDYSKDKRSHHHRSRKH- 744

Query: 111 EPHKHIDEEKKSHH 124
           E H+   +++  HH
Sbjct: 745 EKHRDSSDDEHHHH 758


>At1g54410.1 68414.m06207 dehydrin family protein contains Pfam
          domain, PF00257: Dehydrin
          Length = 98

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 16 LGGGHATSEQKVVVRHKKIINADKKSDEYAWSYPSYEFSYKVH--DPHTHDKKGQSENRE 73
          +GGG+   E K    HKK ++ + KS E+       +   K+H  +  +HD +G+S + E
Sbjct: 14 IGGGNKEGEHKKEEEHKKHVD-EHKSGEHKEGIVD-KIKDKIHGGEGKSHDGEGKSHDGE 71

Query: 74 DDEVK 78
            + K
Sbjct: 72 KKKKK 76


>At5g08450.2 68418.m00996 expressed protein KED, Nicotiana tabacum,
           EMBL:AB009883
          Length = 918

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 32  KKIINADKKSDEYAWSYPSYEFSYKVH-DPHTHDKKGQSENREDDEVKGEYWLIQPDGHK 90
           K+ I   K   +  +  P  +FS K +   +T D K   EN+  +E KGE   ++ +GH 
Sbjct: 222 KREIQGPKSDRDAKFERPGDDFSGKSNAGSYTRDTKFDRENQNYNEQKGEI-KMEKEGHA 280

Query: 91  RI 92
            +
Sbjct: 281 HL 282


>At5g08450.1 68418.m00995 expressed protein KED, Nicotiana tabacum,
           EMBL:AB009883
          Length = 918

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 32  KKIINADKKSDEYAWSYPSYEFSYKVH-DPHTHDKKGQSENREDDEVKGEYWLIQPDGHK 90
           K+ I   K   +  +  P  +FS K +   +T D K   EN+  +E KGE   ++ +GH 
Sbjct: 222 KREIQGPKSDRDAKFERPGDDFSGKSNAGSYTRDTKFDRENQNYNEQKGEI-KMEKEGHA 280

Query: 91  RI 92
            +
Sbjct: 281 HL 282


>At2g34880.1 68415.m04282 transcription factor jumonji (jmj) family
           protein / zinc finger (C5HC2 type) family protein
           contains Pfam domains, PF02375: jmjN domain, PF02373:
           jmjC domain and PF02928: C5HC2 zinc finger
          Length = 806

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 14/100 (14%)

Query: 33  KIINADKKSDEYAWSYPSY-EFSYKVHDPHTHDKKGQSENRED-------DEVKGEYW-L 83
           K ++  K ++E  + + S  EF+ +  + +  D K     R+D       +E++GEYW +
Sbjct: 162 KSVSTPKATEEENFGFESGPEFTLEKFEKYAQDFKDSYFERKDNVGDPSVEEIEGEYWRI 221

Query: 84  IQPDGHKRIVSYHGDKK-----SGFNADVKYSEPHKHIDE 118
           I+ + ++  V Y  D +     SGF+  VK       +D+
Sbjct: 222 IEKETNEVKVLYGTDLENPILGSGFSKGVKIPTRRNDMDK 261


>At5g27650.1 68418.m03313 PWWP domain-containing protein
           hypothetical protein F22F7.12 - Arabidopsis thaliana,
           EMBL:AC009606
          Length = 1072

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 56  KVHDPHTHDKKGQSENREDDEVKGEYWLIQPDGHKRIVSYHGDKKSGFNADVKYSEPHKH 115
           +V +    +K G   + E+DE+K E  LI  D     V    +++ G  +D + SE    
Sbjct: 66  RVLESERSEKDGVVGSEEEDEIKSEDVLIDKDDESSEVKEEEEEEDG--SDDQSSELGSE 123

Query: 116 IDEEK 120
            DE++
Sbjct: 124 ADEKE 128


>At5g05210.1 68418.m00555 nucleolar matrix protein-related contains
           Pfam domain, PF04935: Surfeit locus protein 6
          Length = 386

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 2/86 (2%)

Query: 38  DKKSDEYAW-SYPSYEFSYKVHDPHTHDKKGQSENREDDEVKGEYWLIQPDGHKRIVSYH 96
           D  + +++W +  S     KVHD     K+   ++++  E   E W  + +G ++     
Sbjct: 282 DVIAKKHSWKAATSRAAGIKVHDDPKLLKQSIHKDKKRQEKNAEKWKERIEGQQKFKVEK 341

Query: 97  GDKKSGFNAD-VKYSEPHKHIDEEKK 121
             K+SG  AD ++ ++  K    EKK
Sbjct: 342 QQKRSGNIADRIEQNKMRKIAKREKK 367


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.134    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,009,876
Number of Sequences: 28952
Number of extensions: 212190
Number of successful extensions: 492
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 487
Number of HSP's gapped (non-prelim): 19
length of query: 204
length of database: 12,070,560
effective HSP length: 78
effective length of query: 126
effective length of database: 9,812,304
effective search space: 1236350304
effective search space used: 1236350304
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 57 (27.1 bits)