Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000282-TA|BGIBMGA000282-PA|IPR000618|Insect cuticle
protein
         (64 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    24   2.2  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    24   2.9  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    23   6.6  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    23   6.6  
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    22   8.8  
SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subuni...    22   8.8  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    22   8.8  

>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 14/39 (35%), Positives = 19/39 (48%)

Query: 22  DVKSQHELRHGDVVRGGYELVEPDGRFRKVEYKADDHTG 60
           +VK    LRH ++VR    +VE    +   EY   D TG
Sbjct: 324 EVKILQRLRHKNIVRLLEIMVEKSSVYMVFEYMDHDLTG 362


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II
          complex subunit Rpb2|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 1210

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 13 YSVHDHHTGDVKSQHELRHGDVVRGGYELVEPDG 46
          Y+ H    GDV  ++E+  G +      + E DG
Sbjct: 61 YAQHTGAQGDVTRRYEINFGQIYLSRPTMTEADG 94


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 14  SVHDHHTGDVKSQHELRHGDVVRGGYELVEP 44
           S+ D HT    S+ EL + +V     +L+EP
Sbjct: 246 SMDDFHTAISSSEIELNYSNVSVSTLKLLEP 276


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query: 23  VKSQHELRHGDVVRGGYE 40
           VKS+ E  +GDV +GG E
Sbjct: 735 VKSKIETENGDVSQGGAE 752


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 10  KFAYSVHDHHTGDVKSQHELRHGDVVRGGYELVE 43
           +F+   H    GD       +H DV RGG ++++
Sbjct: 77  RFSKMRHSAEHGDDIGAFGWKHYDVRRGGQQVID 110


>SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subunit
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 150

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 6  FPEYKFAYSVHDHHTGDVKSQHELRHGDVVRG 37
          +PE+ F    +D   G V  + ++  G  +RG
Sbjct: 39 WPEFSFVALDNDRFIGAVICKQDVHRGTTLRG 70


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 8/29 (27%), Positives = 16/29 (55%)

Query: 2   YTTAFPEYKFAYSVHDHHTGDVKSQHELR 30
           Y+T   EY+   + ++     +KS+H+ R
Sbjct: 913 YSTRLEEYQRQINSYNVRVAQIKSEHQRR 941


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.139    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 337,098
Number of Sequences: 5004
Number of extensions: 11115
Number of successful extensions: 21
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 7
length of query: 64
length of database: 2,362,478
effective HSP length: 44
effective length of query: 20
effective length of database: 2,142,302
effective search space: 42846040
effective search space used: 42846040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)