GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000282-TA|BGIBMGA000282-PA|IPR000618|Insect cuticle
protein
         (64 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0345 + 16606739-16607055,16607129-16607462,16609029-16609631     30   0.27 
11_04_0205 + 14860857-14861534,14862585-14862975,14863069-148631...    29   0.35 
12_02_0028 - 12437332-12437576,12438436-12438537,12438619-124390...    29   0.62 
11_01_0409 - 3096372-3097052,3097324-3098652                           27   2.5  
01_04_0065 + 15627559-15627987,15630933-15631176,15632198-15632703     26   4.4  
01_01_1032 - 8174958-8175101,8175625-8175923,8176277-8176409,817...    26   4.4  
02_01_0182 + 1245577-1245670,1245928-1246017,1246258-1246290,124...    25   5.8  
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162...    25   7.6  

>11_04_0345 + 16606739-16607055,16607129-16607462,16609029-16609631
          Length = 417

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 8/38 (21%)

Query: 16  HDHHTGDVKSQHELRHGDVVRGGYELVEPDGRFRKVEY 53
           HDHH G +        GD+VR GYELV   G+F   +Y
Sbjct: 113 HDHHGGVISDM-----GDMVREGYELV---GKFNLGDY 142


>11_04_0205 +
           14860857-14861534,14862585-14862975,14863069-14863170,
           14863438-14863682
          Length = 471

 Score = 29.5 bits (63), Expect = 0.35
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 6   FPEYKFAYSVHDHHTG-DVKSQHELRHGDVVRGGYELVEPDGRFRKVEYKADDHTGY 61
           F  Y    + HD   G D+ S   L HG    GG ++      F  + YK    TGY
Sbjct: 111 FAAYTALLNPHDRIMGLDLPSGGHLTHGYYTAGGKKISATSIYFESLPYKVSAATGY 167


>12_02_0028 -
           12437332-12437576,12438436-12438537,12438619-12439009,
           12439996-12440532
          Length = 424

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 6   FPEYKFAYSVHDHHTG-DVKSQHELRHGDVVRGGYELVEPDGRFRKVEYKADDHTGY 61
           F  Y      H+   G D+ S   L HG    GG ++      F  + YK    TGY
Sbjct: 64  FAAYTGLLQPHERIMGLDLPSGGHLTHGYYTAGGKKISATSIYFESLPYKVSSETGY 120


>11_01_0409 - 3096372-3097052,3097324-3098652
          Length = 669

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 15  VHDHHTGDVKSQHELRHGDVVRGGYELVEPDGRF 48
           V++HH G     H+ +   V+ G Y  +  DG F
Sbjct: 428 VYNHHQGHHTVIHDSQRNLVLTGPYRAISADGSF 461


>01_04_0065 + 15627559-15627987,15630933-15631176,15632198-15632703
          Length = 392

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query: 33  DVVRGGYELVEPDGRFRKVEYKADDHTG 60
           +VV GG + +E D  F  V  K  DH G
Sbjct: 117 EVVAGGKDTMEVDNDFFLVPVKISDHQG 144


>01_01_1032 -
           8174958-8175101,8175625-8175923,8176277-8176409,
           8176525-8176671
          Length = 240

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 2   YTTAFPEYKFAYSVHDHHTGDVKSQHELRHGDVVRGGYELVEPDGRFRKVEY 53
           + TAFP   FA  V D ++G  +   + RH   + G ++   P G  ++VE+
Sbjct: 138 FLTAFPR-GFAIEVLDVYSGPPRIVFKFRHWGYMEGPFKEHPPHG--KRVEF 186


>02_01_0182 +
          1245577-1245670,1245928-1246017,1246258-1246290,
          1246451-1246483,1246657-1246689,1246872-1246904,
          1247073-1247105,1247237-1247286
          Length = 132

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)

Query: 36 RGGYELVEPDGRFRKVEYKADDHTGYD 62
          R GY  V PDGR        D  +GY+
Sbjct: 63 RSGYNSVNPDGRSGYNSVNPDGRSGYN 89



 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)

Query: 36  RGGYELVEPDGRFRKVEYKADDHTGYD 62
           R GY  V PDGR        D  +GY+
Sbjct: 74  RSGYNSVNPDGRSGYNSVNPDGRSGYN 100


>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
            1625603-1625887,1626016-1626030,1626339-1626419,
            1626909-1627322,1627423-1627719,1627801-1629864
          Length = 3057

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 24   KSQHELRHGDVVRGGYELVEPD-GRFRKVEYKAD 56
            +S HE RHG        L+EPD G   K+  +AD
Sbjct: 2685 ESLHENRHGAKDEQTLSLIEPDTGNAEKLPNEAD 2718


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.139    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,269,091
Number of Sequences: 37544
Number of extensions: 81186
Number of successful extensions: 138
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 129
Number of HSP's gapped (non-prelim): 12
length of query: 64
length of database: 14,793,348
effective HSP length: 44
effective length of query: 20
effective length of database: 13,141,412
effective search space: 262828240
effective search space used: 262828240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)