GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000282-TA|BGIBMGA000282-PA|IPR000618|Insect cuticle
protein
         (64 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41105-12|AAA82406.1|  556|Caenorhabditis elegans Hypothetical p...    27   1.6  
Z83123-10|CAB05609.2|  988|Caenorhabditis elegans Hypothetical p...    25   6.6  
AY095296-1|AAM26298.1|  988|Caenorhabditis elegans RecQ helicase...    25   6.6  
Z78198-7|CAB01573.1|  622|Caenorhabditis elegans Hypothetical pr...    25   8.7  

>U41105-12|AAA82406.1|  556|Caenorhabditis elegans Hypothetical
           protein T02G5.12 protein.
          Length = 556

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)

Query: 12  AYSVHDHHTGDVKSQHELRHG 32
           A ++H HHTG V    E  HG
Sbjct: 307 ALNIHTHHTGTVGDDRESGHG 327


>Z83123-10|CAB05609.2|  988|Caenorhabditis elegans Hypothetical
           protein T04A11.6 protein.
          Length = 988

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 15  VHDHHTGDVKSQ-HELRHGDVVRGGYELVEPDGRFRKVEY 53
           V +    ++++Q  +L+ G++V GG+  ++ D  F  V Y
Sbjct: 885 VDEREEEEMRNQLDKLKSGEIVMGGFATLQSDPGFPSVPY 924


>AY095296-1|AAM26298.1|  988|Caenorhabditis elegans RecQ helicase
           protein.
          Length = 988

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 15  VHDHHTGDVKSQ-HELRHGDVVRGGYELVEPDGRFRKVEY 53
           V +    ++++Q  +L+ G++V GG+  ++ D  F  V Y
Sbjct: 885 VDEREEEEMRNQLDKLKSGEIVMGGFATLQSDPGFPSVPY 924


>Z78198-7|CAB01573.1|  622|Caenorhabditis elegans Hypothetical
          protein F55C5.8 protein.
          Length = 622

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)

Query: 22 DVKSQHELRHGDVVR 36
          D + QH LRHGD  R
Sbjct: 28 DAQQQHGLRHGDYAR 42


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.139    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,862,141
Number of Sequences: 27539
Number of extensions: 62561
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97
Number of HSP's gapped (non-prelim): 6
length of query: 64
length of database: 12,573,161
effective HSP length: 44
effective length of query: 20
effective length of database: 11,361,445
effective search space: 227228900
effective search space used: 227228900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)