Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000281-TA|BGIBMGA000281-PA|IPR000618|Insect cuticle
protein
         (197 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       27   0.13 
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    23   1.2  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   2.9  
EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    21   5.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   5.0  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   8.7  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 26.6 bits (56), Expect = 0.13
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 113 ESRDGGAVHGSYSLVE-PDGSVRKVDYTAD 141
           E    G + G Y +V   DGS+R V YTAD
Sbjct: 209 ERTSDGFIVGEYGVVSHDDGSLRGVRYTAD 238


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 93  KYDYAYSVADPH-TGDHKSQHESRDGGAVHGSYSLVEPDGSVRKVDYTADDHHG 145
           K  YA+   D +  G     +E  D      SY+  +  G +  VD T DD  G
Sbjct: 361 KGTYAFRTPDENGEGGAWVGYEDPDTAGNKASYARAKGLGGIAIVDITLDDFRG 414


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 8/27 (29%), Positives = 15/27 (55%)

Query: 122 GSYSLVEPDGSVRKVDYTADDHHGFNA 148
           GSY    P+G + + D +    +G++A
Sbjct: 142 GSYDPYSPNGKIGREDLSPSSLNGYSA 168


>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
          peptide receptor 1 protein.
          Length = 374

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 2  FTKVFVLSAVLAAANAGLL 20
          FT ++VL  ++ A N G+L
Sbjct: 28 FTLLWVLFVIIVAGNVGVL 46


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 2/38 (5%)

Query: 87  DTYAHPKYDYAYSVADPHTGDHKSQHESRDGGAVHGSY 124
           D +A     YA++  DPH  +  S  +  D   + G Y
Sbjct: 200 DPFACTHVIYAFATIDPHNFNMISNDDESD--IIQGGY 235


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 84  HGHDTYAHPKYDYAYS 99
           HGH+T +H  Y   Y+
Sbjct: 291 HGHNTSSHNYYAQNYA 306


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.131    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,138
Number of Sequences: 317
Number of extensions: 973
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 197
length of database: 114,650
effective HSP length: 54
effective length of query: 143
effective length of database: 97,532
effective search space: 13947076
effective search space used: 13947076
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 41 (20.6 bits)