Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000281-TA|BGIBMGA000281-PA|IPR000618|Insect cuticle
protein
         (197 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    29   0.61 
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    25   9.9  

>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 28.7 bits (61), Expect = 0.61
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 87  DTYAHPKYDYAYSVADPHTGDHKSQHESRDGGAVHGSYSLVEPDGSVRKVDYTADDH 143
           DT     YDY+ S +  H G H ++H    GG+     +  +  G+V    Y+ + +
Sbjct: 193 DTVGGGAYDYSSSGSHTHGGSHGTEHR---GGSYGNDNTANKTRGAVSSAGYSGEGY 246


>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 109 KSQHESRDGGAVHGSYSLVEPDGS 132
           K+  +S  G ++HG YS++E  G+
Sbjct: 395 KAIRDSMVGDSIHGLYSILETSGA 418


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.131    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 530,913
Number of Sequences: 5004
Number of extensions: 16084
Number of successful extensions: 25
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 3
length of query: 197
length of database: 2,362,478
effective HSP length: 69
effective length of query: 128
effective length of database: 2,017,202
effective search space: 258201856
effective search space used: 258201856
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)