Silkworm BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000281-TA|BGIBMGA000281-PA|IPR000618|Insect cuticle
protein
         (197 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13642-8|AAG00040.1|  428|Caenorhabditis elegans Similar to tran...    27   6.7  
U13642-7|AAZ32791.1|  446|Caenorhabditis elegans Similar to tran...    27   6.7  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    27   6.7  

>U13642-8|AAG00040.1|  428|Caenorhabditis elegans Similar to
           transporter of divalentcations protein 1, isoform a
           protein.
          Length = 428

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 81  GYAHGHDTYAHPKYDYAYSVADPHTGDHKSQHESRDGGAVH 121
           G++HGHD + H  + +++   D +  DH   H   +    H
Sbjct: 371 GHSHGHDDHGHDSHGHSH---DHNEHDHGHSHGGNNDNHGH 408


>U13642-7|AAZ32791.1|  446|Caenorhabditis elegans Similar to
           transporter of divalentcations protein 1, isoform b
           protein.
          Length = 446

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 81  GYAHGHDTYAHPKYDYAYSVADPHTGDHKSQHESRDGGAVH 121
           G++HGHD + H  + +++   D +  DH   H   +    H
Sbjct: 389 GHSHGHDDHGHDSHGHSH---DHNEHDHGHSHGGNNDNHGH 426


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 81  GYAHG-HDTYAHPKYDYAYSVADPHTGDHKSQHESRDGGAVHGSYS 125
           G  HG H + AH  +  A+     H G H   H+ ++    HG +S
Sbjct: 674 GTHHGAHHSPAHHGHHGAHHEHGAHHGAHHGHHDDKENHHHHGHHS 719



 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/43 (27%), Positives = 18/43 (41%)

Query: 82  YAHGHDTYAHPKYDYAYSVADPHTGDHKSQHESRDGGAVHGSY 124
           + HGH + AH  +   +  A  H G H   H +      HG +
Sbjct: 445 HGHGHHSPAHHGHHGEHHHAPAHHGHHGEHHHAPAHHGHHGEH 487



 Score = 27.1 bits (57), Expect = 8.9
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 7/70 (10%)

Query: 82  YAHGHDTYAHPKYDYAYSVADPHTGDHKSQHESRDGGAVHGSYSLVEPDGSVRKVDYTAD 141
           + HGH   AH  +   + V   H G H + + +  G   HG++    P       ++  D
Sbjct: 593 HGHGHHAPAHHGHHGEHGV---HHGHHGAGYGAHHGH--HGAHHHHAPHHEHH--EHHGD 645

Query: 142 DHHGFNAVVH 151
            HHG + V H
Sbjct: 646 HHHGSHGVHH 655


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.131    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,865,570
Number of Sequences: 27539
Number of extensions: 89693
Number of successful extensions: 204
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 196
Number of HSP's gapped (non-prelim): 10
length of query: 197
length of database: 12,573,161
effective HSP length: 78
effective length of query: 119
effective length of database: 10,425,119
effective search space: 1240589161
effective search space used: 1240589161
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)