Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000281-TA|BGIBMGA000281-PA|IPR000618|Insect cuticle
protein
         (197 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69990.1 68414.m08055 leucine-rich repeat transmembrane prote...    28   4.9  
At2g34470.1 68415.m04231 urease accessory protein (UREG) identic...    27   6.4  

>At1g69990.1 68414.m08055 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor-like protein kinase
           GI:8777368 from [Arabidopsis thaliana]
          Length = 591

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 16/56 (28%), Positives = 25/56 (44%)

Query: 95  DYAYSVADPHTGDHKSQHESRDGGAVHGSYSLVEPDGSVRKVDYTADDHHGFNAVV 150
           D+   V D   G   S  +S+D    +G +  V P+ S   V   + D +GF  V+
Sbjct: 427 DFDARVIDYGLGKLVSSQDSKDSSFSNGKFGYVAPEYSSTMVASLSGDVYGFGIVL 482


>At2g34470.1 68415.m04231 urease accessory protein (UREG) identical
           to urease accessory protein UREG GI:4324678 from
           [Arabidopsis thaliana]; contains Pfam profile: PF01495
           HypB/UreG nucleotide-binding domain
          Length = 275

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 2/30 (6%)

Query: 104 HTGDHKSQHESRDGGAVHGSYSLVEPDGSV 133
           H  DH+  HE  DGG   G  S V  DG V
Sbjct: 9   HHHDHEHDHEKSDGG--EGKASWVGKDGKV 36


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.131    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,808,357
Number of Sequences: 28952
Number of extensions: 88659
Number of successful extensions: 192
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 190
Number of HSP's gapped (non-prelim): 3
length of query: 197
length of database: 12,070,560
effective HSP length: 77
effective length of query: 120
effective length of database: 9,841,256
effective search space: 1180950720
effective search space used: 1180950720
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)