GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000281-TA|BGIBMGA000281-PA|IPR000618|Insect cuticle
protein
         (197 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162...    31   0.82 
06_02_0069 - 11126235-11127538,11128361-11128421                       29   3.3  
03_05_0845 - 28155065-28155374,28156201-28156342,28156375-281565...    28   5.8  
11_01_0409 - 3096372-3097052,3097324-3098652                           27   7.7  
03_02_0213 + 6480521-6480644,6482347-6482499,6482582-6482980,648...    27   7.7  

>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
            1625603-1625887,1626016-1626030,1626339-1626419,
            1626909-1627322,1627423-1627719,1627801-1629864
          Length = 3057

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 108  HKSQHESRDGGAVHGSYSLVEPD-GSVRKVDYTAD 141
            H+S HE+R G     + SL+EPD G+  K+   AD
Sbjct: 2684 HESLHENRHGAKDEQTLSLIEPDTGNAEKLPNEAD 2718


>06_02_0069 - 11126235-11127538,11128361-11128421
          Length = 454

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 83  AHGHDTY--AHPKYDYAYSVADPHTG-DHKSQHESRDGGAV 120
           AHGHD    A  K+ Y Y+  +P  G +H + H   D   V
Sbjct: 362 AHGHDHVHLAKKKFSYYYTFGNPEDGHEHANHHGGYDNHIV 402


>03_05_0845 -
           28155065-28155374,28156201-28156342,28156375-28156505,
           28156591-28156784,28156859-28156969,28157234-28157399,
           28157501-28157668,28157766-28158787
          Length = 747

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 117 GGAVHGSYSLVEPDGSVRKVDYTADDHHGFNA 148
           GG + G    V PDG+  +  + AD  HG  A
Sbjct: 93  GGRIEGQGVFVGPDGATYRGAWAADRRHGVGA 124


>11_01_0409 - 3096372-3097052,3097324-3098652
          Length = 669

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 100 VADPHTGDHKSQHESRDGGAVHGSYSLVEPDGS-VRKVDYTADDHH 144
           V + H G H   H+S+    + G Y  +  DGS + +VD   +D H
Sbjct: 428 VYNHHQGHHTVIHDSQRNLVLTGPYRAISADGSFLIEVDTNNEDVH 473


>03_02_0213 +
           6480521-6480644,6482347-6482499,6482582-6482980,
           6483158-6483234,6483990-6485312
          Length = 691

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 95  DYAYSVADPHTGDHKSQHESRDGGAVHGSYSLVEPDGSVRK--VDYTADDHHGF-NAVVH 151
           +YA S  D   G  KSQ + RD     G     +P  + +K  V ++ + H  F NAV H
Sbjct: 162 EYASSANDGAEGSWKSQKKKRDKDDDDGELESGDPSSTSKKPRVVWSVELHQQFVNAVNH 221


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.131    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,821,899
Number of Sequences: 37544
Number of extensions: 128443
Number of successful extensions: 303
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 300
Number of HSP's gapped (non-prelim): 5
length of query: 197
length of database: 14,793,348
effective HSP length: 78
effective length of query: 119
effective length of database: 11,864,916
effective search space: 1411925004
effective search space used: 1411925004
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)