Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000280-TA|BGIBMGA000280-PA|IPR000618|Insect cuticle
protein
         (170 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1489| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.77)            29   2.7  
SB_10123| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_57086| Best HMM Match : PT (HMM E-Value=2.4)                        27   8.2  

>SB_1489| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.77)
          Length = 872

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 103 GAYSGHGHED-YYAHPKYKYSYSVEDPHTGDHKSQHEVRDGDVVKGEYS-LLQPDGSFRK 160
           G Y+G  +   YYA   Y     ++  +TG + +     DG+   G Y+     DG++  
Sbjct: 695 GNYTGGNYAGGYYAGGNYADGNHIDGNYTGGNYADGNYADGNYADGNYAGGNYADGNYAD 754

Query: 161 VSYSADDHSG 170
            +Y+  +++G
Sbjct: 755 GNYADGNYAG 764



 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 103 GAYS-GHGHEDYYAHPKYKYSYSVEDPHTGDHKSQHEVRDGDVVKGEYSLLQPDGSFRKV 161
           G Y+ G+  + YYA   Y   Y  +  + G + +     DG+   G Y+    DG++   
Sbjct: 420 GNYADGYYADGYYADSNYADGYYADGNYAGGYYASGNYADGNYAGGNYA----DGNYEDG 475

Query: 162 SYS 164
           +Y+
Sbjct: 476 NYA 478


>SB_10123| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 683

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 116 HPKYKYSYSVEDPHTGDHKSQHEVRDGDVVKGEYSLLQP 154
           H ++ + Y V  PHT   +S  E+ +G  +K  + LL P
Sbjct: 487 HQRFLFQYRVT-PHTTTGRSPAELLNGRKLKTRFDLLHP 524


>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/50 (24%), Positives = 20/50 (40%)

Query: 114 YAHPKYKYSYSVEDPHTGDHKSQHEVRDGDVVKGEYSLLQPDGSFRKVSY 163
           Y+ PK+K+S      H          ++  ++K E  LL      R  +Y
Sbjct: 64  YSPPKHKHSSKSNGHHHNSRHKSESAKEPPILKAERKLLASTSPTRSANY 113


>SB_57086| Best HMM Match : PT (HMM E-Value=2.4)
          Length = 226

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 108 HGHEDYYAHPKYKYSYSVEDPHTGDHKSQHE 138
           H +   Y H +Y + Y+ + PH   H+  H+
Sbjct: 84  HQYTHQYTHHQYTHQYTHQYPHQYPHQYPHQ 114


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.132    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,188,293
Number of Sequences: 59808
Number of extensions: 135887
Number of successful extensions: 260
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 255
Number of HSP's gapped (non-prelim): 7
length of query: 170
length of database: 16,821,457
effective HSP length: 77
effective length of query: 93
effective length of database: 12,216,241
effective search space: 1136110413
effective search space used: 1136110413
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)