GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000280-TA|BGIBMGA000280-PA|IPR000618|Insect cuticle
protein
         (170 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       31   0.005
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   2.3  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   2.3  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 31.1 bits (67), Expect = 0.005
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 120 KYSYSVEDPHTGDHKSQHEVRDGDVVKGEYSLLQ-PDGSFRKVSYSAD 166
           K  Y VE  +   ++ +    DG +V GEY ++   DGS R V Y+AD
Sbjct: 192 KVGYVVEGRNYRKYRVEERTSDGFIV-GEYGVVSHDDGSLRGVRYTAD 238


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 111 EDYYAHPKYKYSYSVEDPHTGDHKSQHEVRDGDVV 145
           E+Y  H  Y   Y  E P+  +H   H   DG  V
Sbjct: 369 ENYINHQNYVQGYQGEHPNY-NHYGYHYSGDGGEV 402


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 111 EDYYAHPKYKYSYSVEDPHTGDHKSQHEVRDGDVV 145
           E+Y  H  Y   Y  E P+  +H   H   DG  V
Sbjct: 317 ENYINHQNYVQGYQGEHPNY-NHYGYHYSGDGGEV 350


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.132    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,962
Number of Sequences: 317
Number of extensions: 910
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 170
length of database: 114,650
effective HSP length: 53
effective length of query: 117
effective length of database: 97,849
effective search space: 11448333
effective search space used: 11448333
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.0 bits)
S2: 40 (20.2 bits)