GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000280-TA|BGIBMGA000280-PA|IPR000618|Insect cuticle
protein
         (170 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162...    27   6.0  
06_03_1075 + 27399279-27399376,27399449-27399555,27400791-274008...    27   8.0  
01_05_0082 - 17972276-17973268                                         27   8.0  

>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
            1625603-1625887,1626016-1626030,1626339-1626419,
            1626909-1627322,1627423-1627719,1627801-1629864
          Length = 3057

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 111  EDYYAHPKYKYSYSVEDPHTG-DHKSQHEVRDGDVVKGEYSLLQPD-GSFRKVSYSAD 166
            +D    PK     ++E+  T   H+S HE R G   +   SL++PD G+  K+   AD
Sbjct: 2661 QDDITSPKASQEDALEEVGTELPHESLHENRHGAKDEQTLSLIEPDTGNAEKLPNEAD 2718


>06_03_1075 +
           27399279-27399376,27399449-27399555,27400791-27400898,
           27401763-27401860,27401983-27402033,27402137-27402228,
           27402360-27402459,27402765-27402884,27402977-27403045,
           27403299-27403345,27403428-27403483,27404760-27404800,
           27405155-27405260,27406728-27406860,27406937-27407357
          Length = 548

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 110 HEDY--YAHPKYKYSYSVEDPHTGDHKSQHEVRDGD 143
           HEDY  Y  P  + S   +D     H+S+ + RDGD
Sbjct: 476 HEDYNRYCKPGERSSSRHDDRGYSKHESRSKYRDGD 511


>01_05_0082 - 17972276-17973268
          Length = 330

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/34 (32%), Positives = 15/34 (44%)

Query: 110 HEDYYAHPKYKYSYSVEDPHTGDHKSQHEVRDGD 143
           H+D + HP   +    E   + DH     V DGD
Sbjct: 204 HDDDHHHPALSHEVHEESAGSHDHDDDDHVDDGD 237


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.132    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,757,435
Number of Sequences: 37544
Number of extensions: 118160
Number of successful extensions: 139
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 137
Number of HSP's gapped (non-prelim): 4
length of query: 170
length of database: 14,793,348
effective HSP length: 77
effective length of query: 93
effective length of database: 11,902,460
effective search space: 1106928780
effective search space used: 1106928780
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)