GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000280-TA|BGIBMGA000280-PA|IPR000618|Insect cuticle
protein
         (170 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   0.69 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   4.9  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    21   6.4  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 0.69
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 107 GHGHEDYYAHPKYKYSYSVEDPH 129
           GHGH   +A P + +S++    H
Sbjct: 420 GHGHSHIHATPHHHHSHAATPHH 442


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 11/44 (25%), Positives = 17/44 (38%)

Query: 103  GAYSGHGHEDYYAHPKYKYSYSVEDPHTGDHKSQHEVRDGDVVK 146
            G  S H    YY  P     Y V++ H    + + + +  D  K
Sbjct: 1058 GEMSVHRAGSYYGVPHSTLEYKVKERHLMRPRKRDQKQSDDKTK 1101


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 144 VVKGEYSLLQPDGSFRKVSYSADDH 168
           V +G  S   PDG    ++Y AD++
Sbjct: 70  VSQGSDSYTAPDGQQVSITYVADEN 94


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.132    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,176
Number of Sequences: 429
Number of extensions: 960
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 170
length of database: 140,377
effective HSP length: 54
effective length of query: 116
effective length of database: 117,211
effective search space: 13596476
effective search space used: 13596476
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 41 (20.6 bits)