GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000280-TA|BGIBMGA000280-PA|IPR000618|Insect cuticle
protein
         (170 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45620.1 68415.m05672 nucleotidyltransferase family protein l...    31   0.54 
At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein ...    28   3.8  
At3g42940.1 68416.m04509 expressed protein                             27   8.8  
At3g27930.1 68416.m03486 expressed protein                             27   8.8  
At2g43910.1 68415.m05458 thiol methyltransferase, putative simil...    27   8.8  
At1g14330.1 68414.m01698 kelch repeat-containing F-box family pr...    27   8.8  

>At2g45620.1 68415.m05672 nucleotidyltransferase family protein low
           similarity to SP|O13833| Caffeine-induced death protein
           1 {Schizosaccharomyces pombe}; contains Pfam profiles
           PF03828: PAP/25A associated domain, PF01909:
           Nucleotidyltransferase domain
          Length = 764

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 105 YSGHGHEDYYAHPKYKYSYSVEDPHTGDHKSQ--HEVRDGDVVKGEYSLLQPDG 156
           Y  + HE    HP+   S S  DP+   H++   HE R G   +G +  +  +G
Sbjct: 178 YDSNQHEQLMRHPQSTLSNSNMDPNLSHHRNHDLHEQRGGHSGRGNWGHIGNNG 231


>At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 381

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 112 DYYAHPKYKYSYSVEDPHTGDHKSQHEVR 140
           DY     Y Y    EDP+ GDH   +E +
Sbjct: 39  DYKEQKDYCYDSDSEDPYAGDHFRMYEFK 67


>At3g42940.1 68416.m04509 expressed protein
          Length = 193

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 114 YAHPKYKYSYSVEDPHTGDHKSQHEVRDGDVVKGE 148
           + H +  Y Y +  PH  DH    ++ D  VVK +
Sbjct: 68  FQHFEANYIYDLVHPHLHDHVLSKQISDRIVVKAQ 102


>At3g27930.1 68416.m03486 expressed protein
          Length = 425

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 103 GAYSGHGHEDYYAHPKYKYSYSVEDPHT 130
           GA  G    D+  + ++++   V+DPHT
Sbjct: 82  GAVDGRVEGDFVGNAEFRWQSDVDDPHT 109


>At2g43910.1 68415.m05458 thiol methyltransferase, putative similar
           to thiol methyltransferase 1 GI:14583119 from [Brassica
           oleracea]
          Length = 227

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)

Query: 146 KGEYSLLQPDGSFRKVSYSADDHSG 170
           K  Y LL+PDG    + Y   DH G
Sbjct: 155 KSMYELLKPDGELITLMYPITDHVG 179


>At1g14330.1 68414.m01698 kelch repeat-containing F-box family
           protein contains Pfam profile PF01344: Kelch motif;
           contains weak Pfam PF00646: F-box domain; weak
           similarity to Kelch-like protein 1 (Swiss-Prot:Q9NR64)
           [Homo sapiens]
          Length = 441

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 109 GHEDYYAHPKYKYSYSVEDPHTGDHKSQHEVRDGDVVKGEYSLLQPD-GSFRKVSYSAD 166
           G +DY +H  Y+YS       +G   +      G    GE ++      SF K+S SA+
Sbjct: 197 GKDDYSSHVIYRYSLLTNSWSSGMRMNSPRCLFGSASLGEIAIFAGGFDSFGKISDSAE 255


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.132    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,935,343
Number of Sequences: 28952
Number of extensions: 91726
Number of successful extensions: 124
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 120
Number of HSP's gapped (non-prelim): 6
length of query: 170
length of database: 12,070,560
effective HSP length: 76
effective length of query: 94
effective length of database: 9,870,208
effective search space: 927799552
effective search space used: 927799552
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 56 (26.6 bits)