Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000279-TA|BGIBMGA000279-PA|IPR000618|Insect cuticle
protein
         (128 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       27   0.042
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    20   6.4  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    20   8.4  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 27.5 bits (58), Expect = 0.042
 Identities = 15/44 (34%), Positives = 22/44 (50%)

Query: 71  YSVADPHTGDHKSQHESRDGDSVHGYYSLVQPDGSVRKVEYTAD 114
           Y V   +   ++ +  + DG  V  Y  +   DGS+R V YTAD
Sbjct: 195 YVVEGRNYRKYRVEERTSDGFIVGEYGVVSHDDGSLRGVRYTAD 238


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 43  LEQYATPLEYAGQYD 57
           LE Y   LEY G Y+
Sbjct: 883 LEGYKVKLEYDGPYE 897


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 7/25 (28%), Positives = 12/25 (48%)

Query: 95  GYYSLVQPDGSVRKVEYTADDHNGY 119
           G Y    P+G + + + +    NGY
Sbjct: 142 GSYDPYSPNGKIGREDLSPSSLNGY 166


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.312    0.132    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,560
Number of Sequences: 317
Number of extensions: 1687
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 128
length of database: 114,650
effective HSP length: 50
effective length of query: 78
effective length of database: 98,800
effective search space:  7706400
effective search space used:  7706400
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.5 bits)
S2: 39 (19.8 bits)