GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000279-TA|BGIBMGA000279-PA|IPR000618|Insect cuticle
protein
         (128 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    21   3.3  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              21   3.3  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    20   10.0 

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)

Query: 95  GYYSLVQPDGSVRKVEYTADDHNGYDL 121
           G  S   PDG    + Y AD+ NG+ +
Sbjct: 73  GSDSYTAPDGQQVSITYVADE-NGFQV 98


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 106 VRKVEYTADDHNGYDLNK 123
           +RK+E    + NG DL K
Sbjct: 26  LRKIESVCAEENGIDLKK 43


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 19.8 bits (39), Expect = 10.0
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 89  DGDSVHGYYSLVQPDGSV 106
           D + V G Y L +PD  +
Sbjct: 87  DNEEVCGIYFLAEPDQKI 104


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.132    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,974
Number of Sequences: 429
Number of extensions: 1831
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 128
length of database: 140,377
effective HSP length: 51
effective length of query: 77
effective length of database: 118,498
effective search space:  9124346
effective search space used:  9124346
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.5 bits)
S2: 39 (19.8 bits)