GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000279-TA|BGIBMGA000279-PA|IPR000618|Insect cuticle
protein
         (128 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59920.1 68418.m07514 DC1 domain-containing protein contains ...    28   1.7  
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein              28   1.7  
At4g34150.1 68417.m04846 C2 domain-containing protein similar to...    28   1.7  
At5g54020.1 68418.m06719 expressed protein                             28   2.3  
At1g69690.1 68414.m08020 TCP family transcription factor, putati...    28   2.3  
At4g38480.1 68417.m05438 transducin family protein / WD-40 repea...    27   3.0  
At2g44990.1 68415.m05602 dioxygenase-related low similarity to c...    27   3.0  
At2g12940.1 68415.m01419 expressed protein                             27   3.9  
At4g14990.1 68417.m02303 expressed protein                             26   6.9  
At1g04530.1 68414.m00445 expressed protein                             26   6.9  

>At5g59920.1 68418.m07514 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 710

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 57  DGHDEYAHPKYDFAYSVADPHTGDHKSQHESRDGDSVHGYYSLVQPDGSVRKVEYTADDH 116
           DG D+ +    D +  V+D  + D        D D V     +V  D S    + T+DDH
Sbjct: 639 DGSDDGSD---DVSDDVSDDPSNDVSDDTSDDDSDVVS---DVVSDDASNDDSDDTSDDH 692

Query: 117 NGY 119
           NGY
Sbjct: 693 NGY 695


>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
          Length = 310

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 3/45 (6%)

Query: 28  YAPSAHYAPDTYVVPLEQYATPLEYAGQYDGHDEYAHPKYDFAYS 72
           Y P   YA D Y  P +++A    Y+    G D Y    YD A S
Sbjct: 207 YIPRDRYASDRYAAPADRFAGGDRYS---RGSDRYPPGSYDKARS 248


>At4g34150.1 68417.m04846 C2 domain-containing protein similar to
           calcium-dependent protein kinase [Dunaliella
           tertiolecta] GI:6644464; contains Pfam profile PF00168:
           C2 domain
          Length = 247

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 4   AKAGLYHGHGQAVSSQS-IIRHDGGYAPSAHYAPDTYVVPLEQYATPLEYAGQYDGHDEY 62
           +K G + G  Q +   +   +H+ G APSA YAP          A+P   A  Y G   Y
Sbjct: 113 SKTGRFAGEVQLLLHYAGAKKHNYGSAPSAPYAPHVPQYSAPPSASPYSTAPPYSGPSLY 172


>At5g54020.1 68418.m06719 expressed protein 
          Length = 556

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 21/93 (22%), Positives = 32/93 (34%)

Query: 24  HDGGYAPSAHYAPDTYVVPLEQYATPLEYAGQYDGHDEYAHPKYDFAYSVADPHTGDHKS 83
           H  G+  + H     Y+V   +Y        +   HD + HP Y    S         K 
Sbjct: 359 HTDGFIYACHDGLCRYLVKSIKYDVRCSSVSEPFHHDLHQHPLYFTLQSSRQCQACGTKI 418

Query: 84  QHESRDGDSVHGYYSLVQPDGSVRKVEYTADDH 116
            H+         Y   ++     RKV++  DDH
Sbjct: 419 DHDPLSCTVCDDYSLCMRCTTLPRKVKHRCDDH 451


>At1g69690.1 68414.m08020 TCP family transcription factor, putative
           similar to PCF1 (GI:2580438) and PCF2 [(GI:2580440)
           Oryza sativa]
          Length = 325

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 7/57 (12%)

Query: 52  YAGQYDGHDEYAHPKYDFAYSVAD---PHTGDHKSQHESRDGDSVHGYYSLVQPDGS 105
           Y G   G  E++H     A + A      TG+H +  ++RDGD  H +    Q DGS
Sbjct: 268 YGGGGGGGGEHSHYGVLAALNAAYRPVAETGNHNNNQQNRDGDHHHNH----QEDGS 320


>At4g38480.1 68417.m05438 transducin family protein / WD-40 repeat
           family protein contains contains Pfam PF00400: WD
           domain, G-beta repeat (7 copies, 3 weak);similar to gene
           PC326 protein - mouse, PIR2:S37694
          Length = 471

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 62  YAHPKYDFAYSVADPHTGDHKSQHESRDGDSVHGYYSLVQPDGSVRKVEYTADDHNGY 119
           + +P++   Y V D    D +S  ES D D      S  + +G V  VE T DD N +
Sbjct: 399 FGNPRWFDGYYVDDDDDSDDESSEESSDDDD----SSEEEENGEV-DVEITKDDDNDH 451


>At2g44990.1 68415.m05602 dioxygenase-related low similarity to
           carotenoid cleavage dioxygenase 1 [Arabidopsis thaliana]
           GI:3096910; contains Pfam profile PF03055: Retinal
           pigment epithelial membrane protein
          Length = 618

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 5/45 (11%)

Query: 71  YSVADP--HTGDHKSQHESRDGDSVHGYYSLVQPDGSVRKVEYTA 113
           Y +A P   T DH S     DG   HGY      DG+ RK  +TA
Sbjct: 94  YYLAGPGLFTDDHGSTVHPLDG---HGYLRAFHIDGNKRKATFTA 135


>At2g12940.1 68415.m01419 expressed protein
          Length = 294

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)

Query: 99  LVQPDGSVRKVEYTADDHNGYDLNKINKS 127
           LV  D +  ++E+ A+D+   +LNKI KS
Sbjct: 111 LVDGDQNASRLEFDANDYTDDELNKIAKS 139


>At4g14990.1 68417.m02303 expressed protein
          Length = 787

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 1/83 (1%)

Query: 7   GLYHGHGQAVSSQSIIRHDGGYAPSAHYAPDTYVVPLEQYATPLEYAG-QYDGHDEYAHP 65
           GL HG   A+    + +      P  +      ++ L+Q  +    A  Q   +  Y  P
Sbjct: 268 GLLHGDHSALLHSLMQQQHLQQLPPRNGFTSQQLISLQQRQSLAHLAALQPQLYSSYPSP 327

Query: 66  KYDFAYSVADPHTGDHKSQHESR 88
            +   + V +     HKS H SR
Sbjct: 328 SHKALFGVGEVREHKHKSSHRSR 350


>At1g04530.1 68414.m00445 expressed protein
          Length = 310

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query: 43  LEQYATPLEYAGQYDGHDEYAH 64
           L+ YA  LEY G   G +EY H
Sbjct: 139 LKNYAKFLEYKGDLSGAEEYYH 160


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.312    0.132    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,567,680
Number of Sequences: 28952
Number of extensions: 155158
Number of successful extensions: 185
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 182
Number of HSP's gapped (non-prelim): 10
length of query: 128
length of database: 12,070,560
effective HSP length: 73
effective length of query: 55
effective length of database: 9,957,064
effective search space: 547638520
effective search space used: 547638520
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 54 (25.8 bits)