GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000278-TA|BGIBMGA000278-PA|IPR000618|Insect cuticle
protein
         (163 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       26   0.14 
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   2.2  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   5.1  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   6.8  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 26.2 bits (55), Expect = 0.14
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 104 KSQHESRDGDS-VHGSYSLVQ-PDGSVRKVDYTAD 136
           K + E R  D  + G Y +V   DGS+R V YTAD
Sbjct: 204 KYRVEERTSDGFIVGEYGVVSHDDGSLRGVRYTAD 238


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 8/27 (29%), Positives = 15/27 (55%)

Query: 117 GSYSLVQPDGSVRKVDYTADEHHGFNA 143
           GSY    P+G + + D +    +G++A
Sbjct: 142 GSYDPYSPNGKIGREDLSPSSLNGYSA 168


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query: 21  GHGHAVSSQSIIRHDEAP 38
           GHGH  SS +    + AP
Sbjct: 290 GHGHNTSSHNYYAQNYAP 307


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/22 (31%), Positives = 13/22 (59%)

Query: 133 YTADEHHGFNAVVHNSAPSVHP 154
           Y  D H+GF+ V + +  ++ P
Sbjct: 442 YHKDPHYGFHNVTNTTLQNLTP 463


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.131    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,850
Number of Sequences: 317
Number of extensions: 921
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 163
length of database: 114,650
effective HSP length: 52
effective length of query: 111
effective length of database: 98,166
effective search space: 10896426
effective search space used: 10896426
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)
S2: 40 (20.2 bits)