GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000278-TA|BGIBMGA000278-PA|IPR000618|Insect cuticle
protein
         (163 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0779 + 23082577-23082903,23083347-23083543,23084346-230844...    30   0.79 
03_05_0701 - 26925252-26925578,26929233-26930513                       29   1.8  
03_02_0213 + 6480521-6480644,6482347-6482499,6482582-6482980,648...    29   1.8  
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258     29   1.8  
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162...    29   1.8  
11_03_0010 - 8922361-8922375,8923888-8924610                           27   7.4  
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384...    27   7.4  
07_03_1093 + 23912303-23912467,23912671-23912801,23913079-239130...    27   9.7  

>12_02_0779 +
           23082577-23082903,23083347-23083543,23084346-23084481,
           23084558-23084794,23084885-23085108,23085434-23085551,
           23086080-23086319,23086423-23086673,23088397-23088484,
           23088576-23088727,23089670-23089811
          Length = 703

 Score = 30.3 bits (65), Expect = 0.79
 Identities = 11/39 (28%), Positives = 25/39 (64%)

Query: 102 DHKSQHESRDGDSVHGSYSLVQPDGSVRKVDYTADEHHG 140
           ++K   +S+D  +++G  + +  +GS+R++D  A+E  G
Sbjct: 260 EYKKFLKSKDNQNINGGLANLAEEGSLRRIDSNAEESDG 298


>03_05_0701 - 26925252-26925578,26929233-26930513
          Length = 535

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 15/53 (28%), Positives = 20/53 (37%)

Query: 101 GDHKSQHESRDGDSVHGSYSLVQPDGSVRKVDYTADEHHGFNAVVHNSAPSVH 153
           G  K Q  +  GD+ HG  +   P  S          +H   A   +S PS H
Sbjct: 9   GGRKGQRAADGGDAAHGRPAAAAPSSSSGGAQPPVTVNHASRAAAPSSPPSPH 61


>03_02_0213 +
           6480521-6480644,6482347-6482499,6482582-6482980,
           6483158-6483234,6483990-6485312
          Length = 691

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 90  DFAYSVADPHTGDHKSQHESRDGDSVHGSYSLVQPDGSVRK--VDYTADEHHGF-NAVVH 146
           ++A S  D   G  KSQ + RD D   G      P  + +K  V ++ + H  F NAV H
Sbjct: 162 EYASSANDGAEGSWKSQKKKRDKDDDDGELESGDPSSTSKKPRVVWSVELHQQFVNAVNH 221


>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
          Length = 874

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 127 SVRKVDYTADEHHGFNAVVHNSAPS 151
           SV K+D   D+HHG  AV   ++PS
Sbjct: 801 SVEKLDQDGDDHHGKEAVAAAASPS 825


>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
            1625603-1625887,1626016-1626030,1626339-1626419,
            1626909-1627322,1627423-1627719,1627801-1629864
          Length = 3057

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 103  HKSQHESRDGDSVHGSYSLVQPD-GSVRKVDYTAD 136
            H+S HE+R G     + SL++PD G+  K+   AD
Sbjct: 2684 HESLHENRHGAKDEQTLSLIEPDTGNAEKLPNEAD 2718


>11_03_0010 - 8922361-8922375,8923888-8924610
          Length = 245

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)

Query: 110 RDGDSVHGSYSLVQPDGSVRKVD 132
           RDG  V  +YS   P GS+R VD
Sbjct: 195 RDGSDVPAAYSTGCPAGSIRNVD 217


>03_02_0740 -
           10836752-10837052,10837756-10837814,10837901-10838476,
           10839965-10841686,10841776-10842173,10842264-10842318,
           10842989-10843048,10843444-10843540,10844885-10844955,
           10845029-10845109,10846054-10846124,10847951-10848119,
           10848521-10848683,10848752-10848942,10849037-10849168
          Length = 1381

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 90  DFAYSVADPHTGDHKSQHESRDGDSVHGSYSLVQPDG 126
           D  Y   D H+ +   +HE+ +GDS   SYS  + DG
Sbjct: 443 DSEYDGLDEHSSE--GEHEALNGDSSGASYSSGEIDG 477


>07_03_1093 +
           23912303-23912467,23912671-23912801,23913079-23913087,
           23913146-23913228,23914494-23914596,23915988-23916066,
           23916174-23916274,23916371-23916479
          Length = 259

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 117 GSYSLVQPDGSVRKVDYTADEHHGFNAVVHNSAPSVH 153
           G+Y LV+ D +V  V+Y+     G+N VV  +   V+
Sbjct: 109 GNYFLVRHDAAVSCVEYSYSTVSGYNLVVATAGRHVN 145


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.131    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,693,707
Number of Sequences: 37544
Number of extensions: 120580
Number of successful extensions: 185
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 180
Number of HSP's gapped (non-prelim): 8
length of query: 163
length of database: 14,793,348
effective HSP length: 77
effective length of query: 86
effective length of database: 11,902,460
effective search space: 1023611560
effective search space used: 1023611560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 56 (26.6 bits)