GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000278-TA|BGIBMGA000278-PA|IPR000618|Insect cuticle
protein
         (163 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z11505-7|CAA77581.1|  918|Caenorhabditis elegans Hypothetical pr...    28   2.8  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    27   8.7  

>Z11505-7|CAA77581.1|  918|Caenorhabditis elegans Hypothetical
           protein F59B2.12 protein.
          Length = 918

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 84  YAHPKYDFAYSVADPHTGDHKSQHESRDGDSVHGSYSLVQPDGSVRKVDYTADEHHGFN 142
           +A PK D + +     +  HK  H+S    S   S ++V  DG  + +   +++  G+N
Sbjct: 55  FAMPKLDASKAAMVHSSSSHKGHHQSSGSSSNTHSLTVVGADG--KNITENSEKKDGYN 111


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/43 (25%), Positives = 18/43 (41%)

Query: 78  YAGHDEYAHPKYDFAYSVADPHTGDHKSQHESRDGDSVHGSYS 120
           +  H   AH  +  A+     H G H   H+ ++    HG +S
Sbjct: 677 HGAHHSPAHHGHHGAHHEHGAHHGAHHGHHDDKENHHHHGHHS 719


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.315    0.131    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,951,289
Number of Sequences: 27539
Number of extensions: 95099
Number of successful extensions: 102
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 99
Number of HSP's gapped (non-prelim): 4
length of query: 163
length of database: 12,573,161
effective HSP length: 76
effective length of query: 87
effective length of database: 10,480,197
effective search space: 911777139
effective search space used: 911777139
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 56 (26.6 bits)