GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000278-TA|BGIBMGA000278-PA|IPR000618|Insect cuticle
protein
         (163 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g14690.1 68414.m01756 microtubule associated protein (MAP65/A...    29   1.5  
At1g69990.1 68414.m08055 leucine-rich repeat transmembrane prote...    28   3.5  

>At1g14690.1 68414.m01756 microtubule associated protein
           (MAP65/ASE1) family protein low similarity to SP|P32380
           NUF1 protein (Spindle poly body spacer protein SPC110)
           {Saccharomyces cerevisiae}, smooth muscle myosin heavy
           chain [Homo sapiens] GI:4417214; contains Pfam profile
           PF03999: Microtubule associated protein (MAP65/ASE1
           family)
          Length = 707

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 90  DFAYSVADPHTGDHKSQHESR---DGDSVHGSYSLVQPDGSVRKVDYTADEHHGFNAVV 145
           DF  +V++ H   H++ HE       D++ G + ++    + R V +   + H  NA++
Sbjct: 191 DFGQTVSEVHPSLHRTDHEQSTNISDDTLDGLHHMIHKLKTERSVRFQKVDKHACNAIL 249


>At1g69990.1 68414.m08055 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor-like protein kinase
           GI:8777368 from [Arabidopsis thaliana]
          Length = 591

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 17/66 (25%), Positives = 27/66 (40%)

Query: 90  DFAYSVADPHTGDHKSQHESRDGDSVHGSYSLVQPDGSVRKVDYTADEHHGFNAVVHNSA 149
           DF   V D   G   S  +S+D    +G +  V P+ S   V   + + +GF  V+    
Sbjct: 427 DFDARVIDYGLGKLVSSQDSKDSSFSNGKFGYVAPEYSSTMVASLSGDVYGFGIVLLEIV 486

Query: 150 PSVHPI 155
               P+
Sbjct: 487 TGQKPV 492


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.131    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,846,719
Number of Sequences: 28952
Number of extensions: 90807
Number of successful extensions: 110
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 109
Number of HSP's gapped (non-prelim): 2
length of query: 163
length of database: 12,070,560
effective HSP length: 76
effective length of query: 87
effective length of database: 9,870,208
effective search space: 858708096
effective search space used: 858708096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 56 (26.6 bits)