Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000277-TA|BGIBMGA000277-PA|IPR000618|Insect cuticle
protein
         (162 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    27   1.0  
SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces...    25   7.3  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    24   9.6  

>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 104 KSQHESRDGDSVHGSYSLVQPDGS 127
           K+  +S  GDS+HG YS+++  G+
Sbjct: 395 KAIRDSMVGDSIHGLYSILETSGA 418


>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 132 DYTADEHHGFNAVVHNSAPSVHPIAAHHHH 161
           DY+A   HGF +   N   S+H      HH
Sbjct: 486 DYSAKRDHGFKSSFDNGVLSLHFRFKKLHH 515


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 12/45 (26%), Positives = 17/45 (37%)

Query: 82  DEYAHPKYDFAYSVADPHTGDHKSQHESRDGDSVHGSYSLVQPDG 126
           D   H  +D+ +   D H  DH S   S +  S       +Q  G
Sbjct: 13  DSTHHHTHDYDHHNHDHHGHDHHSHDSSSNSSSEAARLQFIQEHG 57


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.131    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 580,310
Number of Sequences: 5004
Number of extensions: 18871
Number of successful extensions: 31
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 3
length of query: 162
length of database: 2,362,478
effective HSP length: 68
effective length of query: 94
effective length of database: 2,022,206
effective search space: 190087364
effective search space used: 190087364
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 50 (24.2 bits)